RNA–Protein interactions for RNA: ENST00000325599.12

SHQ1-201, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHQ1, Length 2,879 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-201ENST00000325599 ERVK11-1P61568 191 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 ZNF497Q6ZNH5 498 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 CXorf67Q86X51 503 aaPredicted RBP13.82□□□□□ -0.2
SHQ1-201ENST00000325599 ZNF664Q8N3J9 261 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 IL22RA2Q969J5 263 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 MALSU1Q96EH3 234 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 ABHD14BQ96IU4 210 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 TMEM208Q9BTX3 173 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 PBDC1Q9BVG4 233 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 TUBA4BQ9H853 241 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 CACNG5Q9UF02 275 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 LRP5LA4QPB2 252 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 OR2C1O95371 312 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 IL2RGP31785 369 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 HAGHQ16775 308 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 LOXL4Q96JB6 756 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 SNHG12Q9BXW3 62 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 CDH20Q9HBT6 801 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 OR14J1Q9UGF5 321 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 KCNS2Q9ULS6 477 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 USF3Q68DE3 2245 aa13.82□□□□□ -0.2
SHQ1-201ENST00000325599 EP300Q09472 2414 aaPredicted RBP13.82□□□□□ -0.2
SHQ1-201ENST00000325599 NKX2-8O15522 239 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 WDR1O75083 606 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 NXPH2O95156 264 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 TFF1P04155 84 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 S100GP29377 79 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 UBE2NP61088 152 aaKnown RBP13.81□□□□□ -0.2
SHQ1-201ENST00000325599 PSG7Q13046 419 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 AKR1C8PQ5T2L2 129 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 ETFRF1Q6IPR1 90 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST3H2BBQ8N257 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 PUS1Q9Y606 427 aaKnown RBP eCLIP13.81□□□□□ -0.2
SHQ1-201ENST00000325599 CACNA1HO95180 2353 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 BOD1L1Q8NFC6 3051 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.81□□□□□ -0.2
SHQ1-201ENST00000325599 CNOT4O95628 575 aaKnown RBP13.81□□□□□ -0.2
SHQ1-201ENST00000325599 IGKV1-5P01602 117 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 IAPPP10997 89 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 MPV17P39210 176 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 CEBPGP53567 150 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 SOX8P57073 446 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 DMRTA1Q5VZB9 504 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 ZNF826PQ6ZT77 177 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 OR1J1Q8NGS3 322 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 GMPPAQ96IJ6 420 aaPredicted RBP13.81□□□□□ -0.2
SHQ1-201ENST00000325599 RBFOX3A6NFN3 312 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 ZNF705GA8MUZ8 300 aaPredicted RBP13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST1H2BKO60814 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 AGFG2O95081 481 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST1H2BJP06899 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST1H2BOP23527 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST1H2BBP33778 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 CEACAM6P40199 344 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 TNFSF10P50591 281 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST1H2BDP58876 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST1H2BCP62807 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 BAXQ07812 192 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST2H2BEQ16778 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 ZNF585BQ52M93 769 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HEPN1Q6WQI6 88 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 ZNF610Q8N9Z0 462 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST1H2BHQ93079 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 RAB24Q969Q5 203 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 PACRGQ96M98 296 aaPredicted RBP13.81□□□□□ -0.2
SHQ1-201ENST00000325599 TRIB1Q96RU8 372 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST1H2BNQ99877 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 HIST1H2BMQ99879 126 aa13.81□□□□□ -0.2
SHQ1-201ENST00000325599 MKRN2OSH3BPM6 223 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 WNT9BO14905 357 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 MMP9P14780 707 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 CCL11P51671 97 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 THNSL2Q86YJ6 484 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 TMEM178AQ8NBL3 297 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 LFNGQ8NES3 379 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 ATP5SQ99766 215 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 TMEM9BQ9NQ34 198 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 DOCK11Q5JSL3 2073 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 A0A1B0GU03 582 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 ATXN7O15265 892 aaPredicted RBP13.8□□□□□ -0.2
SHQ1-201ENST00000325599 DLEU1O43261 78 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 PSPNO60542 156 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 PGA5P0DJD9 388 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 NKX6-1P78426 367 aaPredicted RBP13.8□□□□□ -0.2
SHQ1-201ENST00000325599 C4orf17Q53FE4 359 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 SOHLH1Q5JUK2 328 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 ZNF343Q6P1L6 599 aa13.8□□□□□ -0.2
SHQ1-201ENST00000325599 ZNF727A8MUV8 499 aa13.79□□□□□ -0.2
SHQ1-201ENST00000325599 ARL16Q0P5N6 197 aa13.79□□□□□ -0.2
SHQ1-201ENST00000325599 CNEP1R1Q8N9A8 125 aa13.79□□□□□ -0.2
SHQ1-201ENST00000325599 RNF150Q9ULK6 438 aa13.79□□□□□ -0.2
SHQ1-201ENST00000325599 POLDIP2Q9Y2S7 368 aa13.79□□□□□ -0.2
SHQ1-201ENST00000325599 HEATR1Q9H583 2144 aaKnown RBP13.79□□□□□ -0.2
SHQ1-201ENST00000325599 METTL15P1P0C7V9 234 aa13.79□□□□□ -0.2
SHQ1-201ENST00000325599 RPS23P62266 143 aaKnown RBP13.79□□□□□ -0.2
SHQ1-201ENST00000325599 MRPL49Q13405 166 aaKnown RBP13.79□□□□□ -0.2
SHQ1-201ENST00000325599 C1QL4Q86Z23 238 aa13.79□□□□□ -0.2
SHQ1-201ENST00000325599 GNPNAT1Q96EK6 184 aaPredicted RBP13.79□□□□□ -0.2
SHQ1-201ENST00000325599 RSG1Q9BU20 258 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms