RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TMPRSS3P57727 454 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 DENND4AQ7Z401 1863 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 WDFY1Q8IWB7 410 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 OR2Z1Q8NG97 314 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 PLA2G12AQ9BZM1 189 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 LRP12Q9Y561 859 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 WNT9BO14905 357 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 PPBPP02775 128 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF735P0CB33 412 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 P2RY2P41231 377 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 TSPAN7P41732 249 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 PLP1P60201 277 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 SLC25A35Q3KQZ1 300 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 TM4SF20Q53R12 229 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 RNFT1Q5M7Z0 435 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF841Q6ZN19 808 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 OR1B1Q8NGR6 318 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 STARD4Q96DR4 205 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF714Q96N38 554 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 SDHCQ99643 169 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 TINAGL1Q9GZM7 467 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 MRPL27Q9P0M9 148 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 KLK11Q9UBX7 282 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 CACNG5Q9UF02 275 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 MRM2Q9UI43 246 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 NTNG1Q9Y2I2 539 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 UBE2L5PA0A1B0GUS4 154 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 J3KTA2 159 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 FCN1O00602 326 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 LINC00869P0C866 280 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 IL11RAQ14626 422 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 KIAA1644Q3SXP7 199 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 WDR38Q5JTN6 314 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 LDLRAD3Q86YD5 345 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 TMEM123Q8N131 208 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 VSTM2LQ96N03 204 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 UBR3Q6ZT12 1888 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 TCRBV16S1A1N1A0A5B0 115 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 C9JCJ5 164 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 FCGR3AP08637 254 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 CD27P26842 260 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 SIGLEC14Q08ET2 396 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF324BQ6AW86 544 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 OR1N1Q8NGS0 311 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 MRPL30Q8TCC3 161 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 GATAD1Q8WUU5 269 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 SLC25A22Q9H936 323 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 SIT1Q9Y3P8 196 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF250P15622 560 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 RND2P52198 227 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ERV3-1Q14264 604 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 OR10J3Q5JRS4 329 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 COA6Q5JTJ3 125 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 C1orf185Q5T7R7 199 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 RBM45Q8IUH3 476 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 OR10G7Q8NGN6 311 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 APOBEC4Q8WW27 367 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 SNRNP40Q96DI7 357 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 CXXC4Q9H2H0 198 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 MBNL1Q9NR56 388 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 TAAR3PQ9P1P4 343 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 KLF13Q9Y2Y9 288 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 DOCK5Q9H7D0 1870 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF205O95201 554 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 C1QTNF9P0C862 333 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 FAM157CP0CG43 387 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 CCL1P22362 96 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 UCP1P25874 307 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 SUMO2P61956 95 aaKnown RBP4.59□□□□□ -1.67
SCN1A-201ENST00000303395 NUTF2P61970 127 aaKnown RBP4.59□□□□□ -1.67
SCN1A-201ENST00000303395 KISS1Q15726 138 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 HLA-DRB5Q30154 266 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 LINC01545Q5VT33 79 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 PARM1Q6UWI2 310 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 ASCL5Q7RTU5 278 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 TBX15Q96SF7 602 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 OR2D2Q9H210 308 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 GSN-AS1Q9NRJ2 163 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 TRAV21A0A0B4J279 112 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 TMEM170AQ8WVE7 144 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 IL17BQ9UHF5 180 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 C11orf94C9JXX5 98 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 ALOX12BO75342 701 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 CD38P28907 300 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 MAS1LP35410 378 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 HOXC5Q00444 222 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 FAM27BQ5VT28 67 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 OR8A1Q8NGG7 326 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 OR10G9Q8NGN4 311 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 SCARF2Q96GP6 870 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-201ENST00000303395 GPR35Q9HC97 309 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 TMEM140Q9NV12 185 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 TMEM14DPA8MWL7 114 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 CDIPTO14735 213 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 SMPD2O60906 423 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 SELENOPP49908 381 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF124Q15973 351 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 ASTLQ6HA08 431 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-201ENST00000303395 NRXN2Q9P2S2 1712 aa4.59□□□□□ -1.67
SCN1A-201ENST00000303395 C5orf49A4QMS7 147 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms