RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 BSCL2Q96G97 398 aaPredicted RBP14.1□□□□□ -0.15
CPSF4-201ENST00000292476 C19orf12Q9NSK7 152 aa14.1□□□□□ -0.15
CPSF4-201ENST00000292476 LYRM2Q9NU23 88 aaPredicted RBP14.1□□□□□ -0.15
CPSF4-201ENST00000292476 COL8A1P27658 744 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 GATA4P43694 442 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 MSMPQ1L6U9 139 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 SMIM21Q3B7S5 101 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 MIDNQ504T8 468 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 TMEM88Q6PEY1 159 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 WDR82Q6UXN9 313 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 C11orf53Q8IXP5 236 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 PLPPR2Q96GM1 343 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 ZNF488Q96MN9 340 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 PBDC1Q9BVG4 233 aa14.09□□□□□ -0.15
CPSF4-201ENST00000292476 KLF2Q9Y5W3 355 aaPredicted RBP14.09□□□□□ -0.15
CPSF4-201ENST00000292476 IGKV1-6A0A0C4DH72 117 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 ADH4P08319 380 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 OR4A8P0C604 315 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 ZNF44P15621 663 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 ID3Q02535 119 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 ADIPOQQ15848 244 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 CBLN2Q8IUK8 224 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 H1FOOQ8IZA3 346 aaPredicted RBP14.08□□□□□ -0.16
CPSF4-201ENST00000292476 BATF2Q8N1L9 274 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 LILRB1Q8NHL6 650 aaPredicted RBP14.08□□□□□ -0.16
CPSF4-201ENST00000292476 MEGF10Q96KG7 1140 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 HS3ST6Q96QI5 342 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 SCRT1Q9BWW7 348 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 SEBOXQ9HB31 216 aaPredicted RBP14.08□□□□□ -0.16
CPSF4-201ENST00000292476 SMCO4Q9NRQ5 59 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 OR2W1Q9Y3N9 320 aa14.08□□□□□ -0.16
CPSF4-201ENST00000292476 TRAV24A0A0B4J272 114 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 IGKV1D-13A0A0B4J2D9 117 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 K7N7A8 449 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 SPRY3O43610 288 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 IGKV1-13P0DP09 117 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 TNFRSF1AP19438 455 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 VAMP2P63027 116 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 TNFAIP6P98066 277 aaPredicted RBP14.07□□□□□ -0.16
CPSF4-201ENST00000292476 NHLH2Q02577 135 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 PRAMEF6Q5VXH4 476 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 ADAM5Q6NVV9 412 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 OR2V2Q96R30 315 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 IL36RNQ9UBH0 155 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 MLXQ9UH92 298 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 BTBD17A6NE02 478 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 IFNL4K9M1U5 179 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 HSPA12AO43301 675 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 ADAM20O43506 726 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 CLDN14O95500 239 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 FOLR2P14207 255 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 F2RP25116 425 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 APOBEC3AP31941 199 aaPredicted RBP14.07□□□□□ -0.16
CPSF4-201ENST00000292476 GUK1Q16774 197 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 Q6P435 159 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 ACP7Q6ZNF0 438 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 OR10J5Q8NHC4 309 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 HIPK2Q9H2X6 1198 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 UFSP2Q9NUQ7 469 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 RNF115Q9Y4L5 304 aa14.07□□□□□ -0.16
CPSF4-201ENST00000292476 A0A1B0GU03 582 aa14.06□□□□□ -0.16
CPSF4-201ENST00000292476 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.06□□□□□ -0.16
CPSF4-201ENST00000292476 IGSF23A1L1A6 192 aa14.06□□□□□ -0.16
CPSF4-201ENST00000292476 PGLYRP1O75594 196 aaPredicted RBP14.06□□□□□ -0.16
CPSF4-201ENST00000292476 CD55P08174 381 aa14.06□□□□□ -0.16
CPSF4-201ENST00000292476 ZNF616Q08AN1 781 aa14.06□□□□□ -0.16
CPSF4-201ENST00000292476 TMEM252Q8N6L7 170 aa14.06□□□□□ -0.16
CPSF4-201ENST00000292476 C15orf54Q8N8G6 183 aa14.06□□□□□ -0.16
CPSF4-201ENST00000292476 LINC01560Q8TB33 94 aa14.06□□□□□ -0.16
CPSF4-201ENST00000292476 GNPNAT1Q96EK6 184 aaPredicted RBP14.06□□□□□ -0.16
CPSF4-201ENST00000292476 EGLN1Q9GZT9 426 aa14.06□□□□□ -0.16
CPSF4-201ENST00000292476 CCL28Q9NRJ3 127 aa14.06□□□□□ -0.16
CPSF4-201ENST00000292476 SHISA9B4DS77 424 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 C9JQL5 133 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 HS3ST1O14792 307 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 AGPAT2O15120 278 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 OR2H2O95918 312 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 HAND1O96004 215 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 F12P00748 615 aaPredicted RBP14.05□□□□□ -0.16
CPSF4-201ENST00000292476 IGHV1-46P01743 117 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 PRH1P02810 166 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 GRNP28799 593 aaKnown RBP14.05□□□□□ -0.16
CPSF4-201ENST00000292476 POLR2GP62487 172 aaKnown RBP eCLIP14.05□□□□□ -0.16
CPSF4-201ENST00000292476 AVPI1Q5T686 147 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 PLPPR1Q8TBJ4 325 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 LRRC29Q8WV35 223 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 AKR1E2Q96JD6 320 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 MS4A5Q9H3V2 200 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 TUBA4BQ9H853 241 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 PRR14LQ5THK1 2151 aa14.05□□□□□ -0.16
CPSF4-201ENST00000292476 SETXQ7Z333 2677 aaKnown RBP14.05□□□□□ -0.16
CPSF4-201ENST00000292476 FAM24AA6NFZ4 105 aa14.04□□□□□ -0.16
CPSF4-201ENST00000292476 C17orf100A8MU93 164 aa14.04□□□□□ -0.16
CPSF4-201ENST00000292476 SRRM5B3KS81 715 aa14.04□□□□□ -0.16
CPSF4-201ENST00000292476 B9A039 149 aa14.04□□□□□ -0.16
CPSF4-201ENST00000292476 HSD17B6O14756 317 aa14.04□□□□□ -0.16
CPSF4-201ENST00000292476 SSSCA1O60232 199 aa14.04□□□□□ -0.16
CPSF4-201ENST00000292476 TESK1Q15569 626 aa14.04□□□□□ -0.16
CPSF4-201ENST00000292476 EFNB3Q15768 340 aa14.04□□□□□ -0.16
CPSF4-201ENST00000292476 CLEC9AQ6UXN8 241 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 179.5 ms