RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 AESQ08117 197 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 ZNF260Q3ZCT1 412 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 CDNFQ49AH0 187 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 PAN3Q58A45 887 aaKnown RBP13.72□□□□□ -0.21
SDCBP-201ENST00000260130 CTRB2Q6GPI1 263 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 OR10K2Q6IF99 312 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 C11orf42Q8N5U0 333 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 PHYHIPLQ96FC7 376 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 SUCNR1Q9BXA5 334 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 ZNF230Q9UIE0 474 aaPredicted RBP13.72□□□□□ -0.21
SDCBP-201ENST00000260130 IGHV1-69DA0A0B4J2H0 117 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 MEX3AA1L020 520 aaKnown RBP13.72□□□□□ -0.21
SDCBP-201ENST00000260130 TRIM77I1YAP6 450 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 BCL2L11O43521 198 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 BPNT1O95861 308 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 IGHV1-69P01742 117 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 ZNF728P0DKX0 622 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 DLX1P56177 255 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 TAF9Q16594 264 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 MPV17LQ2QL34 196 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 RUSC1-AS1Q66K80 236 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 FAM122CQ6P4D5 195 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 TRAPPC6BQ86SZ2 158 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 TMEM104Q8NE00 496 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 BANF2Q9H503 90 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 VSIG4Q9Y279 399 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 SOX21Q9Y651 276 aaPredicted RBP13.72□□□□□ -0.21
SDCBP-201ENST00000260130 LINC00312Q9Y6C7 94 aa13.72□□□□□ -0.21
SDCBP-201ENST00000260130 RNASEK-C17orf49H0YIS7 233 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 HSPB6O14558 160 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 CRTAPO75718 401 aaPredicted RBP13.71□□□□□ -0.21
SDCBP-201ENST00000260130 ZBTB25P24278 435 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 GLIPR1P48060 266 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 DLX6P56179 175 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 PRB3Q04118 309 aaPredicted RBP13.71□□□□□ -0.21
SDCBP-201ENST00000260130 KRBOX4Q5JUW0 171 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 NCR3LG1Q68D85 454 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 ACOT7LQ6ZUV0 252 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 TCF23Q7RTU1 214 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 PHB2Q99623 299 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 CST11Q9H112 138 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 ZNF581Q9P0T4 197 aa13.71□□□□□ -0.21
SDCBP-201ENST00000260130 C17orf98A8MV24 154 aa13.71□□□□□ -0.22
SDCBP-201ENST00000260130 RAB27BO00194 218 aa13.71□□□□□ -0.22
SDCBP-201ENST00000260130 ATXN7L3Q14CW9 347 aaPredicted RBP13.71□□□□□ -0.22
SDCBP-201ENST00000260130 TMEM17Q86X19 198 aa13.71□□□□□ -0.22
SDCBP-201ENST00000260130 STPG2Q8N412 459 aa13.71□□□□□ -0.22
SDCBP-201ENST00000260130 SUMF2Q8NBJ7 301 aa13.71□□□□□ -0.22
SDCBP-201ENST00000260130 COQ2Q96H96 371 aa13.71□□□□□ -0.22
SDCBP-201ENST00000260130 ZNF714Q96N38 554 aa13.71□□□□□ -0.22
SDCBP-201ENST00000260130 SELENOIQ9C0D9 397 aa13.71□□□□□ -0.22
SDCBP-201ENST00000260130 ATRQ13535 2644 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 TEX46H3BTG2 121 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 TBPP20226 339 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 KCNJ3P48549 501 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 ERVFRD-1P60508 538 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 RBMS3Q6XE24 437 aaKnown RBP13.7□□□□□ -0.22
SDCBP-201ENST00000260130 SIGLECL1Q8N7X8 197 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 MITD1Q8WV92 249 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 PPP1R1CQ8WVI7 109 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 AIFM2Q9BRQ8 373 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 IFT46Q9NQC8 304 aa13.7□□□□□ -0.22
SDCBP-201ENST00000260130 UBE2J1Q9Y385 318 aaPredicted RBP13.7□□□□□ -0.22
SDCBP-201ENST00000260130 VSIG8P0DPA2 414 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 UBE2E1P51965 193 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 HILS1P60008 231 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 KLRD1Q13241 179 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 THAP6Q8TBB0 222 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 ZNF48Q96MX3 618 aaPredicted RBP13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FBN1P35555 2871 aaKnown RBP13.69□□□□□ -0.22
SDCBP-201ENST00000260130 TRGV10A0A0A0MS01 117 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 ODAMA1E959 279 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 C9orf170A2RU37 121 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A10PA6NDY2 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A18PA6NE21 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A16PA6NEW6 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A20PA6NIJ5 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A8PA6NJQ4 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A7PA6NKC0 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A22PA8MWA6 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A12PA8MX19 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A5PA8MXJ8 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A23PA8MXZ1 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 RBP4P02753 201 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A15PP0C7V4 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A13PP0C7W8 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A14PP0C7W9 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FAM90A24PP0C7X0 464 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 LUMP51884 338 aaPredicted RBP13.69□□□□□ -0.22
SDCBP-201ENST00000260130 SRSF2Q01130 221 aaKnown RBP13.69□□□□□ -0.22
SDCBP-201ENST00000260130 PPP1R1AQ13522 171 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 PIP4P2Q8N4L2 257 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 KCNG3Q8TAE7 436 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 CORO2AQ92828 525 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 Q96M66 194 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 JMJD8Q96S16 334 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 ZNF471Q9BX82 626 aaPredicted RBP13.69□□□□□ -0.22
SDCBP-201ENST00000260130 SPACA1Q9HBV2 294 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 TAS2R3Q9NYW6 316 aa13.69□□□□□ -0.22
SDCBP-201ENST00000260130 FBLN5Q9UBX5 448 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms