RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SSTR5P35346 364 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 EDDM3AQ14507 147 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 AANATQ16613 207 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 FAM201AQ5SY85 155 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 FAM53AQ6NSI3 398 aaPredicted RBP18.78■□□□□ 0.6
CDX1-201ENST00000231656 TRAT1Q6PIZ9 186 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 BAP18Q8IXM2 172 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 DMBX1Q8NFW5 382 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 PPP1R35Q8TAP8 253 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 DCTN5Q9BTE1 182 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 C11orf1Q9H5F2 150 aa18.78■□□□□ 0.6
CDX1-201ENST00000231656 RCL1Q9Y2P8 373 aaKnown RBP18.78■□□□□ 0.6
CDX1-201ENST00000231656 LRRC30A6NM36 301 aa18.77■□□□□ 0.6
CDX1-201ENST00000231656 ODAMA1E959 279 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 K7N7A8 449 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 TLE4Q04727 773 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 CR1LQ2VPA4 569 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 ZNF645Q8N7E2 425 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 CCL17Q92583 94 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 ARL11Q969Q4 196 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 ZC4H2Q9NQZ6 224 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 PIGBOS1A0A0B4J2F0 54 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 IGHV1-69-2A0A0G2JMI3 117 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 MFSD2BA6NFX1 497 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 SERPINE2P07093 398 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 COX6B1P14854 86 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 P2RY1P47900 373 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 ABHD14BQ96IU4 210 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 RAB1BQ9H0U4 201 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 FBXL17Q9UF56 701 aa18.76■□□□□ 0.59
CDX1-201ENST00000231656 USF3Q68DE3 2245 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 IGKV1-39P01597 117 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 IGKV1D-39P04432 117 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 PPP1CCP36873 323 aaKnown RBP18.75■□□□□ 0.59
CDX1-201ENST00000231656 NKX2-1P43699 371 aaPredicted RBP18.75■□□□□ 0.59
CDX1-201ENST00000231656 HTD2P86397 168 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 EIF4EBP1Q13541 118 aaPredicted RBP18.75■□□□□ 0.59
CDX1-201ENST00000231656 TOR2AQ5JU69 321 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 STUMQ69YW2 141 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 ZBTB34Q8NCN2 500 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 ZNRF1Q8ND25 227 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 MARVELD3Q96A59 401 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 C5orf30Q96GV9 206 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 TMEM106BQ9NUM4 274 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 LIN7CQ9NUP9 197 aaKnown RBP18.75■□□□□ 0.59
CDX1-201ENST00000231656 SDHAF2Q9NX18 166 aa18.75■□□□□ 0.59
CDX1-201ENST00000231656 A0A0G2JRQ6 117 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 TMEM178BH3BS89 294 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 GPR137BO60478 399 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 MSMO1Q15800 293 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 ZNF585BQ52M93 769 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 RPL7L1Q6DKI1 246 aaKnown RBP18.74■□□□□ 0.59
CDX1-201ENST00000231656 THOC7Q6I9Y2 204 aaKnown RBP18.74■□□□□ 0.59
CDX1-201ENST00000231656 C1orf87Q8N0U7 546 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 NINJ1Q92982 152 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 SDSLQ96GA7 329 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 OR2D2Q9H210 308 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 PLEKHF2Q9H8W4 249 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 BARX1Q9HBU1 254 aaPredicted RBP18.74■□□□□ 0.59
CDX1-201ENST00000231656 TACC2O95359 2948 aa18.74■□□□□ 0.59
CDX1-201ENST00000231656 SPINT2O43291 252 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 P2RX3P56373 397 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 TMEM33P57088 247 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 GPR157Q5UAW9 335 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 OR2S2Q9NQN1 319 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 PFDN2Q9UHV9 154 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 RNF150Q9ULK6 438 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 DSCAML1Q8TD84 2053 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 MEX3AA1L020 520 aaKnown RBP18.73■□□□□ 0.59
CDX1-201ENST00000231656 RNF212BA8MTL3 300 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 GZMHP20718 246 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 CXorf66Q5JRM2 361 aaPredicted RBP18.73■□□□□ 0.59
CDX1-201ENST00000231656 ZNF561Q8N587 486 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 RFESDQ8TAC1 157 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 GPR146Q96CH1 333 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 BSCL2Q96G97 398 aaPredicted RBP18.73■□□□□ 0.59
CDX1-201ENST00000231656 NCOR1P1Q9H4R4 102 aa18.73■□□□□ 0.59
CDX1-201ENST00000231656 DOPEY2Q9Y3R5 2298 aa18.72■□□□□ 0.59
CDX1-201ENST00000231656 PITX3O75364 302 aa18.72■□□□□ 0.59
CDX1-201ENST00000231656 GAPDHP04406 335 aaKnown RBP18.72■□□□□ 0.59
CDX1-201ENST00000231656 SLC25A6P12236 298 aa18.72■□□□□ 0.59
CDX1-201ENST00000231656 POLR2GP62487 172 aaKnown RBP eCLIP18.72■□□□□ 0.59
CDX1-201ENST00000231656 ID3Q02535 119 aa18.72■□□□□ 0.59
CDX1-201ENST00000231656 TEX36Q5VZQ5 186 aa18.72■□□□□ 0.59
CDX1-201ENST00000231656 DEFB108BQ8NET1 73 aa18.72■□□□□ 0.59
CDX1-201ENST00000231656 LSM10Q969L4 123 aaKnown RBP18.72■□□□□ 0.59
CDX1-201ENST00000231656 IGHV3-43A0A0B4J1X8 118 aa18.71■□□□□ 0.59
CDX1-201ENST00000231656 I3L521 148 aa18.71■□□□□ 0.59
CDX1-201ENST00000231656 FGF16O43320 207 aa18.71■□□□□ 0.59
CDX1-201ENST00000231656 IGHV3-43DP0DP04 118 aa18.71■□□□□ 0.59
CDX1-201ENST00000231656 SELLP14151 372 aa18.71■□□□□ 0.59
CDX1-201ENST00000231656 MUC1P15941 1255 aaPredicted RBP18.71■□□□□ 0.59
CDX1-201ENST00000231656 COL8A2P25067 703 aa18.71■□□□□ 0.59
CDX1-201ENST00000231656 CDKN1AP38936 164 aa18.71■□□□□ 0.59
CDX1-201ENST00000231656 EIF5AP63241 154 aaKnown RBP18.71■□□□□ 0.59
CDX1-201ENST00000231656 HFEQ30201 348 aa18.71■□□□□ 0.59
CDX1-201ENST00000231656 TMED6Q8WW62 240 aa18.71■□□□□ 0.59
CDX1-201ENST00000231656 NEU4Q8WWR8 484 aaPredicted RBP18.71■□□□□ 0.59
CDX1-201ENST00000231656 A0A1B0GU03 582 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 LYNX1G3V0Z9 82 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms