RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 DUX4Q9UBX2 424 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 JPT1Q9UK76 154 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 KIAA2026Q5HYC2 2103 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 S100A10P60903 97 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 CLINT1Q14677 625 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 FAM216BQ8N7L0 139 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 CCL17Q92583 94 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 RBPMSQ93062 196 aaKnown RBP12.36□□□□□ -0.43
CCDC47-201ENST00000225726 CNTNAP3BQ96NU0 1288 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 CNTNAP3Q9BZ76 1288 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 RNF212BA8MTL3 300 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 F2RL2O00254 374 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 EXOSC2Q13868 293 aaKnown RBP12.36□□□□□ -0.43
CCDC47-201ENST00000225726 OR51H1Q8NH63 302 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 LIN7CQ9NUP9 197 aaKnown RBP12.36□□□□□ -0.43
CCDC47-201ENST00000225726 CALYQ9NYX4 217 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 OR5AC2Q9NZP5 309 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 ZG16O60844 167 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 CGB3P0DN86 165 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 CGB7P0DN87 165 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 OR2D2Q9H210 308 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 NIT2Q9NQR4 276 aa12.36□□□□□ -0.43
CCDC47-201ENST00000225726 ICE1Q9Y2F5 2266 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 PKD1L2Q7Z442 2459 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 IGHV3-43A0A0B4J1X8 118 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 IGHV1-69-2A0A0G2JMI3 117 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 IGHV3-43DP0DP04 118 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 PPOXP50336 477 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 C9orf152Q5JTZ5 239 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 SPIN2AQ99865 258 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 SPIN2BQ9BPZ2 258 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 FAM74A7A6NL05 159 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 SMCO1Q147U7 214 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 FAM74A3Q4VXF1 159 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 FAM53AQ6NSI3 398 aaPredicted RBP12.35□□□□□ -0.43
CCDC47-201ENST00000225726 ZFP57Q9NU63 452 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 TRGV10A0A0A0MS01 117 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 MEX3AA1L020 520 aaKnown RBP12.35□□□□□ -0.43
CCDC47-201ENST00000225726 F8W036 122 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 BCL2L11O43521 198 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 RLN2P04090 185 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 OR1S1Q8NH92 325 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 EDARADDQ8WWZ3 215 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 UBQLN2Q9UHD9 624 aa12.35□□□□□ -0.43
CCDC47-201ENST00000225726 KANTRA0A1W2PQU2 76 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 YPEL1O60688 119 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 DEDDO75618 318 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 SERPINE2P07093 398 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 CORO2AQ92828 525 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 YPEL2Q96QA6 119 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 PLEKHF2Q9H8W4 249 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 RNF150Q9ULK6 438 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 TNFRSF13BO14836 293 aaPredicted RBP12.34□□□□□ -0.43
CCDC47-201ENST00000225726 TMPRSS2O15393 492 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 G0S2P27469 103 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 EIF4EBP1Q13541 118 aaPredicted RBP12.34□□□□□ -0.43
CCDC47-201ENST00000225726 C17orf58Q2M2W7 97 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 ALKAL2Q6UX46 152 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 OR4D5Q8NGN0 318 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 GNG12Q9UBI6 72 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 SCGB1D2O95969 90 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 MBPP02686 304 aaPredicted RBP12.34□□□□□ -0.43
CCDC47-201ENST00000225726 VDAC1P21796 283 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 LTC4SQ16873 150 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 NMSQ5H8A3 153 aa12.34□□□□□ -0.43
CCDC47-201ENST00000225726 COL6A6A6NMZ7 2263 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 KBTBD11-OT1A0A1B0GTJ5 212 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 CLEC18AA5D8T8 446 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 FABP1P07148 127 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 AKR1C2P52895 323 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 LOXL3P58215 753 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 AKR1C1Q04828 323 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 ZNF273Q14593 569 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 MORN2Q502X0 79 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 CLEC18CQ8NCF0 446 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 OR52M1Q8NGK5 317 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 RRNAD1Q96FB5 475 aaKnown RBP12.33□□□□□ -0.44
CCDC47-201ENST00000225726 C5orf30Q96GV9 206 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 CXorf58Q96LI9 332 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 AQP10Q96PS8 301 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 SLC25A10Q9UBX3 287 aaPredicted RBP12.33□□□□□ -0.44
CCDC47-201ENST00000225726 CLN8Q9UBY8 286 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 LSM5Q9Y4Y9 91 aaKnown RBP12.33□□□□□ -0.44
CCDC47-201ENST00000225726 ZNF729A6NN14 1252 aaPredicted RBP12.33□□□□□ -0.44
CCDC47-201ENST00000225726 K7EPK0 472 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 TXNL1O43396 289 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 UBA52P62987 128 aaKnown RBP12.33□□□□□ -0.44
CCDC47-201ENST00000225726 FAM219AQ8IW50 185 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 FOXRED2Q8IWF2 684 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 FAM71E2Q8N5Q1 922 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 PSG11Q9UQ72 335 aa12.33□□□□□ -0.44
CCDC47-201ENST00000225726 ADAM20O43506 726 aa12.32□□□□□ -0.44
CCDC47-201ENST00000225726 HFEQ30201 348 aa12.32□□□□□ -0.44
CCDC47-201ENST00000225726 TMEM30BQ3MIR4 351 aa12.32□□□□□ -0.44
CCDC47-201ENST00000225726 TCF23Q7RTU1 214 aa12.32□□□□□ -0.44
CCDC47-201ENST00000225726 LINC00574Q9H8X3 128 aa12.32□□□□□ -0.44
CCDC47-201ENST00000225726 ARFGEF3Q5TH69 2177 aa12.32□□□□□ -0.44
CCDC47-201ENST00000225726 DSCAML1Q8TD84 2053 aa12.32□□□□□ -0.44
CCDC47-201ENST00000225726 NDUFB7P17568 137 aa12.32□□□□□ -0.44
CCDC47-201ENST00000225726 MEF2CQ06413 473 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms