RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FADS6Q8N9I5 356 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 ATP6V0BQ99437 205 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 GZMBP10144 247 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 KIR2DL2P43627 348 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-220ENST00000641603 Q0VG73 95 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 GAGE2BQ13066 116 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 RUNX3Q13761 415 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 GAGE2EQ4V326 116 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 Q6ZNB5 142 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM40Q8WWA1 233 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 GAGE2DQ9UEU5 116 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 SERGEFQ9UGK8 458 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 GZMHP20718 246 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 RRADP55042 308 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 HYAL1Q12794 435 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 SRSF7Q16629 238 aaKnown RBP eCLIP4.07□□□□□ -1.76
SCN1A-220ENST00000641603 CACNG4Q9UBN1 327 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 COL24A1Q17RW2 1714 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 TSPAN7P41732 249 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 THAP10Q9P2Z0 257 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-220ENST00000641603 A0A1B0GTH9 108 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 IZUMO1RA6ND01 250 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 PIAS2O75928 621 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 IGHMP01871 453 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 TSPOP30536 169 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 HSD17B8Q92506 261 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 C3orf80F5H4A9 247 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 NDUFB4O95168 129 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 COX5BP10606 129 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 UCP1P25874 307 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 CALHM1Q8IU99 346 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 OR8I2Q8N0Y5 310 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 GVQW1Q8N7I0 195 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 OR2Z1Q8NG97 314 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 RAB1CQ92928 201 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 SLC25A10Q9UBX3 287 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-220ENST00000641603 LY75O60449 1722 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM8BA6NDV4 472 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 RPS15P62841 145 aaKnown RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 MRPS21P82921 87 aaKnown RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 ANKRD33Q7Z3H0 272 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM25Q86YD3 366 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 GAPTQ8N292 157 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 TM2D1Q9BX74 207 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 THYN1Q9P016 225 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 SPAG17Q6Q759 2223 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 UPK3AO75631 287 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 PPBPP02775 128 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 OR3A4PP47883 348 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 FGF8P55075 233 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 OR1D5P58170 312 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 ICAM4Q14773 271 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 GAGE13Q4V321 117 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF683Q8IZ20 524 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 MAP1LC3AQ9H492 121 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 GPR35Q9HC97 309 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 DDX60LQ5H9U9 1706 aaKnown RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 TRGV10A0A0A0MS01 117 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 PGPEP1LA6NFU8 196 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 TIMM8AO60220 97 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 Q5PR19 223 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 OR51G1Q8NGK1 321 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF385AQ96PM9 386 aaKnown RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 PXMP4Q9Y6I8 212 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 DXOO77932 396 aaKnown RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF414Q96IQ9 312 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 A0A1W2PP55 124 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 CEACAM18A8MTB9 384 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 CLDN14O95500 239 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 NMUP48645 174 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 RBM11P57052 281 aaKnown RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 PSG5Q15238 335 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 OR10D3Q8NH80 312 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 SERF1AO75920 110 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 CLLU1OSQ5K130 101 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 OTPQ5XKR4 325 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 CST9LQ9H4G1 147 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 NRAPQ86VF7 1730 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 ERVK11-1P61568 191 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 B4GALNT1Q00973 533 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 PRSS27Q9BQR3 290 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 CLEC1BQ9P126 229 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 SIRT4Q9Y6E7 314 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 ATP23Q9Y6H3 246 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 A0A0G2JLM5 398 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 A8MWV9 139 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 BGLAPP02818 100 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 OPRK1P41145 380 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 EMDP50402 254 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 EFNB2P52799 333 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 RNF126Q9BV68 326 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 J3QT63 122 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 APOMO95445 188 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 CTLA4P16410 223 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 SELENOHQ8IZQ5 122 aaKnown RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 G6PC2Q9NQR9 355 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 ERRFI1Q9UJM3 462 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-220ENST00000641603 ICE1Q9Y2F5 2266 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 DEFA4P12838 97 aa4.06□□□□□ -1.76
SCN1A-220ENST00000641603 RPS4XP62701 263 aaKnown RBP4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms