RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 MOB3BQ86TA1 216 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 TMEM104Q8NE00 496 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 Q96M66 194 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 SPATA25Q9BR10 227 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 GON7Q9BXV9 100 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 CST11Q9H112 138 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 C19orf73Q9NVV2 129 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 DNAH10Q8IVF4 4471 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 IGHV3-43A0A0B4J1X8 118 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 A8MZ25 164 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 ANKRD65E5RJM6 399 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 PTGES3LE9PB15 166 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 IGHV3-43DP0DP04 118 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 GABPB1Q06547 395 aaPredicted RBP12.65□□□□□ -0.38
CLN3-264ENST00000637985 SPHARQ15513 63 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 ZNF554Q86TJ5 538 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 IZUMO1Q8IYV9 350 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 OR4K15Q8NH41 348 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 UBALD1Q8TB05 177 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 PHYHIPQ92561 330 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 ST6GALNAC6Q969X2 333 aa12.65□□□□□ -0.38
CLN3-264ENST00000637985 LSM2Q9Y333 95 aaKnown RBP12.65□□□□□ -0.38
CLN3-264ENST00000637985 TXNL1O43396 289 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 PDCD6O75340 191 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 HBZP02008 142 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 OR8U8P0C7N1 319 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 CD1BP29016 333 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 REG1BP48304 166 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 ZNF137PP52743 207 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 HNF4GQ14541 408 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 STEAP3Q658P3 488 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 GLT8D1Q68CQ7 371 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 SIGIRRQ6IA17 410 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 SLC25A48Q6ZT89 311 aaKnown RBP12.64□□□□□ -0.39
CLN3-264ENST00000637985 OR2T10Q8NGZ9 312 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 RTN4IP1Q8WWV3 396 aaPredicted RBP12.64□□□□□ -0.39
CLN3-264ENST00000637985 LINC00476Q8WZB0 136 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 EAF1Q96JC9 268 aaPredicted RBP12.64□□□□□ -0.39
CLN3-264ENST00000637985 MBNL3Q9NUK0 354 aaKnown RBP12.64□□□□□ -0.39
CLN3-264ENST00000637985 GNG12Q9UBI6 72 aa12.64□□□□□ -0.39
CLN3-264ENST00000637985 UBE2QL1A1L167 161 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 RCC1P18754 421 aaPredicted RBP12.63□□□□□ -0.39
CLN3-264ENST00000637985 GPR12P47775 334 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 CFHR3Q02985 330 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 INSL4Q14641 139 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 MED22Q15528 200 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 SRSF7Q16629 238 aaKnown RBP eCLIP12.63□□□□□ -0.39
CLN3-264ENST00000637985 RBM48Q5RL73 367 aaKnown RBP12.63□□□□□ -0.39
CLN3-264ENST00000637985 LRRTM1Q86UE6 522 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 TGIF2LXQ8IUE1 241 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 Q8N1Y9 231 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 PRR18Q8N4B5 295 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 Q8N6K4 173 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 ZNF439Q8NDP4 499 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 OR1N2Q8NGR9 330 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 TMED9Q9BVK6 235 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 KCNIP1Q9NZI2 227 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 TPRKBQ9Y3C4 175 aa12.63□□□□□ -0.39
CLN3-264ENST00000637985 SAP30O75446 220 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 IGHG4P01861 327 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 IFNA6P05013 189 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 CD37P11049 281 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 SRMP19623 302 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 VHLP40337 213 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 ZNF134P52741 427 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 AQP4P55087 323 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 IRF3Q14653 427 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 HSD17B12Q53GQ0 312 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 CT45A1Q5HYN5 189 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 C1orf100Q5SVJ3 147 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 FAM53AQ6NSI3 398 aaPredicted RBP12.62□□□□□ -0.39
CLN3-264ENST00000637985 CEACAM19Q7Z692 300 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 OR1L1Q8NH94 360 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 CT45A3Q8NHU0 189 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 MYOZ3Q8TDC0 251 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 UFD1Q92890 307 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 FAM46BQ96A09 425 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 TAF9BQ9HBM6 251 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 LIN7CQ9NUP9 197 aaKnown RBP12.62□□□□□ -0.39
CLN3-264ENST00000637985 LRRC42Q9Y546 428 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 TNCP24821 2201 aa12.62□□□□□ -0.39
CLN3-264ENST00000637985 IGHV3-72A0A0B4J1Y9 119 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 NCBP2LA6PVI3 153 aaKnown RBP12.61□□□□□ -0.39
CLN3-264ENST00000637985 OVOL1O14753 267 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 SLC31A2O15432 143 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 MOSP00540 346 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 PSMB8P28062 276 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 HTD2P86397 168 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 ZNF616Q08AN1 781 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 OR8H1Q8NGG4 311 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 OR10V1Q8NGI7 309 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 OR6Q1Q8NGQ2 317 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 KCNG3Q8TAE7 436 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 MRPL30Q8TCC3 161 aaKnown RBP12.61□□□□□ -0.39
CLN3-264ENST00000637985 NRG4Q8WWG1 115 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 DCUN1D4Q92564 292 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 NEDD4LQ96PU5 975 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 ABCG5Q9H222 651 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 DUSP21Q9H596 190 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 OR2S2Q9NQN1 319 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms