RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SELEP16581 610 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 PLGLB1Q02325 96 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF92Q03936 586 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CEACAM21Q3KPI0 293 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ABLIM2Q6H8Q1 611 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OR2T2Q6IF00 324 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 HEPN1Q6WQI6 88 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 RTN4RL2Q86UN3 420 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 LRRC75A-AS1Q8N1F1 130 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OR11L1Q8NGX0 322 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OR10D3Q8NH80 312 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 MBD6Q96DN6 1003 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 LINC00470Q9BZP3 86 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 SH3BGRL3Q9H299 93 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 KCNIP2Q9NS61 270 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 VAX2Q9UIW0 290 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 LAMP3Q9UQV4 416 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OR2W1Q9Y3N9 320 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 MMP24Q9Y5R2 645 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 LOC102723971A0A1B0GUV8 181 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CEBPZOSA8MTT3 80 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF727A8MUV8 499 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 FAM157AC9JC47 383 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ZIC3O60481 467 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 RBMXL2O75526 392 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 METTL15P1P0C7V9 234 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 COX6A1P12074 109 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 F2RP25116 425 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM41BQ5BJD5 291 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 DMRTC1Q5HYR2 192 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF385CQ66K41 422 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CLEC9AQ6UXN8 241 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 RNF144BQ7Z419 303 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ZBTB34Q8NCN2 500 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OR10V1Q8NGI7 309 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CA5BP1Q8WTZ4 195 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 SPSB4Q96A44 273 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 APH1AQ96BI3 265 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 IMMP1LQ96LU5 166 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 TP53RKQ96S44 253 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CABLES2Q9BTV7 478 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 SCRT1Q9BWW7 348 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 C1QTNF5Q9BXJ0 243 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OPN3Q9H1Y3 402 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ASCL3Q9NQ33 180 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 MANBALQ9NQG1 85 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM242Q9NWH2 141 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 TREM2Q9NZC2 230 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 NAT8Q9UHE5 227 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ZFP92A6NM28 416 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 H7BYZ3 331 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 SYNGR2O43760 224 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 SERPINA7P05543 415 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 NDUFB7P17568 137 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 BCL3P20749 454 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ARF1P84077 181 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ID3Q02535 119 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 DAZAP2Q15038 168 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 PHYHD1Q5SRE7 291 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 NCR3LG1Q68D85 454 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 FAM58AQ8N1B3 248 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CYB561D1Q8N8Q1 229 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 MUCL1Q96DR8 90 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 FAM173AQ9BQD7 235 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 PKIBQ9C010 78 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ACTR3CQ9C0K3 210 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 PITPNC1Q9UKF7 332 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 TRAPPC2LQ9UL33 140 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 FREM3P0C091 2139 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 TNRC6AQ8NDV7 1962 aaKnown RBP3.4□□□□□ -1.86
SCN1A-214ENST00000637038 TRBV6-6A0A0A6YYG2 114 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 MAP1LC3B2A6NCE7 125 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 MARCH11A6NNE9 402 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 C9JQL5 133 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 PPP5D1E7EU14 171 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 CYTIPO60759 359 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 TIAF1O95411 115 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 IGHV2-5P01817 119 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 FGF7P21781 194 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 GPM6AP51674 278 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 MZT1Q08AG7 82 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF154Q13106 437 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 RNPS1Q15287 305 aaKnown RBP3.4□□□□□ -1.86
SCN1A-214ENST00000637038 ACOT6Q3I5F7 207 aaPredicted RBP3.4□□□□□ -1.86
SCN1A-214ENST00000637038 ACER2Q5QJU3 275 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 PRSS57Q6UWY2 283 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 SSX8Q7RTT4 187 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 TCTEX1D1Q8N7M0 179 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 ZIC4Q8N9L1 334 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 OR51H1Q8NH63 302 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 DYRK2Q92630 601 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 LHX4Q969G2 390 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 SMIM7Q9BQ49 75 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 SRXN1Q9BYN0 137 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 MAP1LC3BQ9GZQ8 125 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 CDH20Q9HBT6 801 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 RAB9BQ9NP90 201 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 TIMM9Q9Y5J7 89 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 URGCP-MRPS24S4R325 110 aa3.4□□□□□ -1.86
SCN1A-214ENST00000637038 CREBBPQ92793 2442 aa3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms