RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 MOGAT3Q86VF5 341 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 GALMQ96C23 342 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 MRPL37Q9BZE1 423 aaKnown RBP13.11□□□□□ -0.31
CLN3-251ENST00000636853 MAGT1Q9H0U3 335 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 OOEPA6NGQ2 149 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 IFNL4K9M1U5 179 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 HBZP02008 142 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 FAM157CP0CG43 387 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 FOLR2P14207 255 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 ZNF16P17020 682 aaPredicted RBP13.11□□□□□ -0.31
CLN3-251ENST00000636853 IL2RGP31785 369 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 PRDX2P32119 198 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 GNMTQ14749 295 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 OR52L2PQ8NGH6 319 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 RNF141Q8WVD5 230 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 MEGF10Q96KG7 1140 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 SPIN2AQ99865 258 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 SPIN2BQ9BPZ2 258 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 RNF150Q9ULK6 438 aa13.11□□□□□ -0.31
CLN3-251ENST00000636853 IGLV3-9A0A075B6K5 115 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 A0A0G2JRQ6 117 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 SRRM5B3KS81 715 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 GPR137BO60478 399 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 SERPINE2P07093 398 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 P2RY1P47900 373 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 NHLH2Q02577 135 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 EDDM3AQ14507 147 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 AVPI1Q5T686 147 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 DRAM1Q8N682 238 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 GCSAMQ8N6F7 178 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 ITLN1Q8WWA0 313 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 DCTN5Q9BTE1 182 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 MMP26Q9NRE1 261 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 PLCE1Q9P212 2302 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 IGKV1D-17A0A075B6S4 117 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 DUXBA0A1W2PPF3 345 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 SIGLEC5O15389 551 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 FBXO24O75426 580 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 EPHA1P21709 976 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 SSTR5P35346 364 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 IZUMO4Q1ZYL8 232 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 OR13A1Q8NGR1 328 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 IL22RA2Q969J5 263 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 WFDC1Q9HC57 220 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 NBEAQ8NFP9 2946 aa13.1□□□□□ -0.31
CLN3-251ENST00000636853 C16orf97H3BN30 126 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 SSSCA1O60232 199 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 ARHGDIBP52566 201 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 EIF5AP63241 154 aaKnown RBP13.09□□□□□ -0.31
CLN3-251ENST00000636853 WFDC8Q8IUA0 241 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 AKR1E2Q96JD6 320 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 C11orf1Q9H5F2 150 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 ZNF835Q9Y2P0 537 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 CLEC18AA5D8T8 446 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 FAM24AA6NFZ4 105 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 ZNF705EA8MWA4 302 aaPredicted RBP13.09□□□□□ -0.31
CLN3-251ENST00000636853 JTBO76095 146 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 IGKV1-39P01597 117 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 IGKV1D-39P04432 117 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 ASCL1P50553 236 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 FAM201AQ5SY85 155 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 GPR157Q5UAW9 335 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 CLEC18CQ8NCF0 446 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 RFESDQ8TAC1 157 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 GPR146Q96CH1 333 aa13.09□□□□□ -0.31
CLN3-251ENST00000636853 ZNF737O75373 536 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 GAPDHP04406 335 aaKnown RBP13.08□□□□□ -0.32
CLN3-251ENST00000636853 RPS23P62266 143 aaKnown RBP13.08□□□□□ -0.32
CLN3-251ENST00000636853 BLOC1S1P78537 153 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 SFT2D1Q8WV19 159 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 PLA2G2EQ9NZK7 142 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 DIDO1Q9BTC0 2240 aaKnown RBP13.08□□□□□ -0.32
CLN3-251ENST00000636853 IGHV3-43A0A0B4J1X8 118 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 SMIM6P0DI80 62 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 IGHV3-43DP0DP04 118 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 PPP1CCP36873 323 aaKnown RBP13.08□□□□□ -0.32
CLN3-251ENST00000636853 CAV2P51636 162 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 EWSR1Q01844 656 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLN3-251ENST00000636853 TMEM88Q6PEY1 159 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 OR2C3Q8N628 320 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 RNASE11Q8TAA1 199 aaKnown RBP13.08□□□□□ -0.32
CLN3-251ENST00000636853 OR2D2Q9H210 308 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 ELOVL5Q9NYP7 299 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 LPAR3Q9UBY5 353 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 RAXQ9Y2V3 346 aa13.08□□□□□ -0.32
CLN3-251ENST00000636853 SMG1Q96Q15 3661 aaKnown RBP13.07□□□□□ -0.32
CLN3-251ENST00000636853 S100A8P05109 93 aa13.07□□□□□ -0.32
CLN3-251ENST00000636853 CFHR2P36980 270 aa13.07□□□□□ -0.32
CLN3-251ENST00000636853 SELENOVP59797 346 aa13.07□□□□□ -0.32
CLN3-251ENST00000636853 ID3Q02535 119 aa13.07□□□□□ -0.32
CLN3-251ENST00000636853 PJVKQ0ZLH3 352 aa13.07□□□□□ -0.32
CLN3-251ENST00000636853 LTC4SQ16873 150 aa13.07□□□□□ -0.32
CLN3-251ENST00000636853 ZNF585BQ52M93 769 aa13.07□□□□□ -0.32
CLN3-251ENST00000636853 ZNF808Q8N4W9 903 aaPredicted RBP13.07□□□□□ -0.32
CLN3-251ENST00000636853 SAT2Q96F10 170 aaPredicted RBP13.07□□□□□ -0.32
CLN3-251ENST00000636853 IGSF23A1L1A6 192 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 IGHV1-46P01743 117 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 WNT2P09544 360 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 TMPRSS3P57727 454 aa13.06□□□□□ -0.32
CLN3-251ENST00000636853 MST1LQ2TV78 715 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms