RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SSTP61278 116 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 TRIM61Q5EBN2 209 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 PRAMEF5Q5TYX0 476 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 PRAMEF6Q5VXH4 476 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 SLC23A3Q6PIS1 610 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 TOMM20LQ6UXN7 152 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 TOX3O15405 576 aaPredicted RBP10.79□□□□□ -0.68
LIG1-221ENST00000613670 IGHV2-70P01814 119 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 SPSB3Q6PJ21 355 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 ZIC4Q8N9L1 334 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 OR2Y1Q8NGV0 311 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 MS4A10Q96PG2 267 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 SMOC1Q9H4F8 434 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 ZNF552Q9H707 407 aaPredicted RBP10.79□□□□□ -0.68
LIG1-221ENST00000613670 UCP1P25874 307 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 PPP1CBP62140 327 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 OR8G1Q15617 311 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 DTX1Q86Y01 620 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 OR5D13Q8NGL4 314 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 OR4A16Q8NH70 328 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 NEIL1Q96FI4 390 aaPredicted RBP10.78□□□□□ -0.68
LIG1-221ENST00000613670 SEBOXQ9HB31 216 aaPredicted RBP10.78□□□□□ -0.68
LIG1-221ENST00000613670 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.78□□□□□ -0.68
LIG1-221ENST00000613670 LRRC3CA6NJW4 275 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 PMELP40967 661 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 RSPO1Q2MKA7 263 aaPredicted RBP10.78□□□□□ -0.68
LIG1-221ENST00000613670 Q3ZCU0 254 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 CYB5R2Q6BCY4 276 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 LRTM2Q8N967 370 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 OR1P1Q8NH06 330 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 EDARADDQ8WWZ3 215 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 EGLN1Q9GZT9 426 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 EP300Q09472 2414 aaPredicted RBP10.78□□□□□ -0.68
LIG1-221ENST00000613670 A8MXE2 369 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 C11orf94C9JXX5 98 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 TMEM50AO95807 157 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 IQCJQ1A5X6 159 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 C17orf82Q86X59 251 aaPredicted RBP10.78□□□□□ -0.68
LIG1-221ENST00000613670 LURAP1LQ8IV03 231 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 HIST3H2BBQ8N257 126 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 FADS6Q8N9I5 356 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 TAF15Q92804 592 aaKnown RBP eCLIP10.78□□□□□ -0.686e-7■■■■□ 23.8
LIG1-221ENST00000613670 GALMQ96C23 342 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 UBE2ZQ9H832 354 aaPredicted RBP10.78□□□□□ -0.68
LIG1-221ENST00000613670 DNAH14Q0VDD8 3507 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 F6UZH7 168 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 GYPAP02724 150 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 COL10A1Q03692 680 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 ACOT6Q3I5F7 207 aaPredicted RBP10.78□□□□□ -0.68
LIG1-221ENST00000613670 TPRX1Q8N7U7 411 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 ATG101Q9BSB4 218 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 CTDSP1Q9GZU7 261 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 MTCH1Q9NZJ7 389 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 POLDIP2Q9Y2S7 368 aa10.78□□□□□ -0.68
LIG1-221ENST00000613670 C2orf16Q68DN1 1984 aa10.77□□□□□ -0.68
LIG1-221ENST00000613670 IGHV1-45A0A0A0MS14 117 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 PATE3B3GLJ2 98 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 ARR3P36575 388 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 CDC34P49427 236 aaPredicted RBP10.77□□□□□ -0.69
LIG1-221ENST00000613670 ID3Q02535 119 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 IL11RAQ14626 422 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 REC114Q7Z4M0 266 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 CPEB3Q8NE35 698 aaKnown RBP10.77□□□□□ -0.69
LIG1-221ENST00000613670 MRGPRDQ8TDS7 321 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 HS3ST6Q96QI5 342 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 TAAR3PQ9P1P4 343 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 IGLV3-12A0A075B6K2 115 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 MBP02144 154 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 CEACAM21Q3KPI0 293 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 OR4X1Q8NH49 305 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 TMEM56Q96MV1 263 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 PCED1AQ9H1Q7 454 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.77□□□□□ -0.69
LIG1-221ENST00000613670 TMEM56-RWDD3S4R434 201 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 A0A087WWC5 75 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 DEFA4P12838 97 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 FABP6P51161 128 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 NUFIP2Q7Z417 695 aaKnown RBP10.77□□□□□ -0.69
LIG1-221ENST00000613670 TGIF2LXQ8IUE1 241 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 STRADBQ9C0K7 418 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 DLL3Q9NYJ7 618 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 CISD1Q9NZ45 108 aaKnown RBP10.77□□□□□ -0.69
LIG1-221ENST00000613670 FZR1Q9UM11 496 aa10.77□□□□□ -0.69
LIG1-221ENST00000613670 DUXBA0A1W2PPF3 345 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 ARGFXA6NJG6 315 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 CRYGSP22914 178 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 CEBPDP49716 269 aaPredicted RBP10.76□□□□□ -0.69
LIG1-221ENST00000613670 SERF2P84101 59 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 HIST3H3Q16695 136 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 TBC1D28Q2M2D7 210 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 FGFRL1Q8N441 504 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 PARLQ9H300 379 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 DUSP13Q9UII6 198 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 PSG11Q9UQ72 335 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 LAMTOR5O43504 91 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 TIMM8AO60220 97 aaPredicted RBP10.76□□□□□ -0.69
LIG1-221ENST00000613670 SELEP16581 610 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 NDUFB7P17568 137 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 HIST1H3AP68431 136 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 OR5A2Q8NGI9 324 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms