RNA–Protein interactions for RNA: ENST00000594661.5

PNKP-204, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 2,111 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-204ENST00000594661 C10orf35Q96D05 121 aa13.15□□□□□ -0.3
PNKP-204ENST00000594661 REEP6Q96HR9 211 aa13.15□□□□□ -0.3
PNKP-204ENST00000594661 ARHGAP5-AS1Q96IT6 56 aa13.15□□□□□ -0.3
PNKP-204ENST00000594661 LSM5Q9Y4Y9 91 aaKnown RBP13.15□□□□□ -0.3
PNKP-204ENST00000594661 TNRC6AQ8NDV7 1962 aaKnown RBP13.14□□□□□ -0.31
PNKP-204ENST00000594661 CEACAM8P31997 349 aaPredicted RBP13.14□□□□□ -0.31
PNKP-204ENST00000594661 OR3A2P47893 321 aa13.14□□□□□ -0.31
PNKP-204ENST00000594661 PRDX4Q13162 271 aa13.14□□□□□ -0.31
PNKP-204ENST00000594661 SMIM15Q7Z3B0 74 aa13.14□□□□□ -0.31
PNKP-204ENST00000594661 ZNF100Q8IYN0 542 aa13.14□□□□□ -0.31
PNKP-204ENST00000594661 TMEM170AQ8WVE7 144 aa13.14□□□□□ -0.31
PNKP-204ENST00000594661 HIPK2Q9H2X6 1198 aa13.14□□□□□ -0.31
PNKP-204ENST00000594661 C12orf49Q9H741 205 aa13.14□□□□□ -0.31
PNKP-204ENST00000594661 ELL3Q9HB65 397 aaPredicted RBP13.14□□□□□ -0.31
PNKP-204ENST00000594661 PRSS50Q9UI38 385 aa13.14□□□□□ -0.31
PNKP-204ENST00000594661 ZNF503-AS2A6NEH8 195 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 TNFSF13O75888 250 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 MDKP21741 143 aaPredicted RBP13.13□□□□□ -0.31
PNKP-204ENST00000594661 CHRNB4P30926 498 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 PRSS12P56730 875 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 CYYR1Q96J86 154 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 PTPRZ1P23471 2315 aaPredicted RBP13.13□□□□□ -0.31
PNKP-204ENST00000594661 HSBP1L1C9JCN9 74 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 CCL25O15444 150 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 RAD51DO75771 328 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 ALDH3B1P43353 468 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 ORAOV1Q8WV07 137 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 ARHGAP21Q5T5U3 1957 aa13.13□□□□□ -0.31
PNKP-204ENST00000594661 BOD1L1Q8NFC6 3051 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 KLK10O43240 276 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 HLA-HP01893 362 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 MBPP02686 304 aaPredicted RBP13.12□□□□□ -0.31
PNKP-204ENST00000594661 PTTG1IPP53801 180 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 ARFRP1Q13795 201 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 GCNT2Q8N0V5 402 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 FAM89BQ8N5H3 189 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 OR13G1Q8NGZ3 307 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 CLDND2Q8NHS1 167 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 ELOVL1Q9BW60 279 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 PRDM14Q9GZV8 571 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 TMEM225BP0DP42 221 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 SPINK2P20155 84 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 RANP62826 216 aaKnown RBP13.12□□□□□ -0.31
PNKP-204ENST00000594661 P4HA3Q7Z4N8 544 aa13.12□□□□□ -0.31
PNKP-204ENST00000594661 EMG1Q92979 244 aaKnown RBP13.12□□□□□ -0.31
PNKP-204ENST00000594661 RBMXL1Q96E39 390 aaKnown RBP13.12□□□□□ -0.31
PNKP-204ENST00000594661 GLRA1P23415 457 aa13.11□□□□□ -0.31
PNKP-204ENST00000594661 BLVRBP30043 206 aaPredicted RBP13.11□□□□□ -0.31
PNKP-204ENST00000594661 PTGER4P35408 488 aa13.11□□□□□ -0.31
PNKP-204ENST00000594661 RBMXP38159 391 aaKnown RBP13.11□□□□□ -0.31
PNKP-204ENST00000594661 MTCP1P56278 107 aa13.11□□□□□ -0.31
PNKP-204ENST00000594661 VAMP2P63027 116 aa13.11□□□□□ -0.31
PNKP-204ENST00000594661 FAM90A2PQ658T7 463 aa13.11□□□□□ -0.31
PNKP-204ENST00000594661 OR8G2PQ6IF36 304 aa13.11□□□□□ -0.31
PNKP-204ENST00000594661 ZNF66Q6ZN08 573 aa13.11□□□□□ -0.31
PNKP-204ENST00000594661 HSF4Q9ULV5 492 aa13.11□□□□□ -0.31
PNKP-204ENST00000594661 PFN1P07737 140 aaKnown RBP13.1□□□□□ -0.31
PNKP-204ENST00000594661 ATP6V1FQ16864 119 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 ZNF880Q6PDB4 577 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 FBXW12Q6X9E4 464 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 NUDT10Q8NFP7 164 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 SPSB1Q96BD6 273 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 SLC35E1Q96K37 410 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 TAAR6Q96RI8 345 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 TP53RKQ96S44 253 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 SEPSECSQ9HD40 501 aaKnown RBP13.1□□□□□ -0.31
PNKP-204ENST00000594661 PLSCR2Q9NRY7 297 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 CLCF1Q9UBD9 225 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 RCL1Q9Y2P8 373 aaKnown RBP13.1□□□□□ -0.31
PNKP-204ENST00000594661 MGAQ8IWI9 3026 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 MED12LQ86YW9 2145 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 FAM230AA0A1W2PPH8 454 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 RRP8O43159 456 aaKnown RBP13.1□□□□□ -0.31
PNKP-204ENST00000594661 IFNA21P01568 189 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 TFPI2P48307 235 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 TEX43Q6ZNM6 134 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 TBX15Q96SF7 602 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 SDF2L1Q9HCN8 221 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.1□□□□□ -0.31
PNKP-204ENST00000594661 AK3Q9UIJ7 227 aa13.1□□□□□ -0.31
PNKP-204ENST00000594661 LOC102723971A0A1B0GUV8 181 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 FOXI3A8MTJ6 420 aaPredicted RBP13.09□□□□□ -0.31
PNKP-204ENST00000594661 AQP7O14520 342 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 CCL2P13500 99 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 AMY2BP19961 511 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 FAM3BP58499 235 aaPredicted RBP13.09□□□□□ -0.31
PNKP-204ENST00000594661 ZNF92Q03936 586 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 CNN3Q15417 329 aaKnown RBP13.09□□□□□ -0.31
PNKP-204ENST00000594661 ACOT6Q3I5F7 207 aaPredicted RBP13.09□□□□□ -0.31
PNKP-204ENST00000594661 ZADH2Q8N4Q0 377 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 OR5H2Q8NGV7 314 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 OR2G3Q8NGZ4 309 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 TRIB1Q96RU8 372 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 ABHD14AQ9BUJ0 271 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 ST6GALNAC5Q9BVH7 336 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 TM2D1Q9BX74 207 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 PECRQ9BY49 303 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 ATXN7O15265 892 aaPredicted RBP13.09□□□□□ -0.31
PNKP-204ENST00000594661 FOXC1Q12948 553 aa13.09□□□□□ -0.31
PNKP-204ENST00000594661 ACTL10Q5JWF8 245 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms