RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	SNRNP25	Q9BV90	132 aa	Known RBP	3.74	□□□□□ -1.81
SS18-223	ENST00000583595	LRRC61	Q9BV99	259 aa		3.74	□□□□□ -1.81
SS18-223	ENST00000583595	SELENOI	Q9C0D9	397 aa		3.74	□□□□□ -1.81
SS18-223	ENST00000583595	OR8D2	Q9GZM6	311 aa		3.74	□□□□□ -1.81
SS18-223	ENST00000583595	SLC25A31	Q9H0C2	315 aa		3.74	□□□□□ -1.81
SS18-223	ENST00000583595	PATZ1	Q9HBE1	687 aa	Known RBP	3.74	□□□□□ -1.81
SS18-223	ENST00000583595	CALY	Q9NYX4	217 aa		3.74	□□□□□ -1.81
SS18-223	ENST00000583595	COMMD9	Q9P000	198 aa		3.74	□□□□□ -1.81
SS18-223	ENST00000583595	ABRACL	Q9P1F3	81 aa		3.74	□□□□□ -1.81
SS18-223	ENST00000583595	TNFSF18	Q9UNG2	199 aa		3.74	□□□□□ -1.81
SS18-223	ENST00000583595	PRG3	Q9Y2Y8	225 aa	Predicted RBP	3.74	□□□□□ -1.81
SS18-223	ENST00000583595	UBIAD1	Q9Y5Z9	338 aa		3.74	□□□□□ -1.81
SS18-223	ENST00000583595	YLPM1	P49750	1951 aa	Known RBP	3.74	□□□□□ -1.81
SS18-223	ENST00000583595	ZNF646	O15015	1829 aa	Predicted RBP	3.74	□□□□□ -1.81
SS18-223	ENST00000583595	PHIP	Q8WWQ0	1821 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595		A0A087WYN8	130 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	TRAV14DV4	A0A0A6YYC5	116 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	TRAV39	A0A0B4J263	110 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	IGKV1D-13	A0A0B4J2D9	117 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595		A0A0G2JLM5	398 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595		M0R036	132 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	XRCC2	O43543	280 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	OR1I1	O60431	355 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BK	O60814	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	STK16	O75716	305 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	KBTBD11	O94819	623 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	DUSP14	O95147	198 aa	Known RBP	3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HBE1	P02100	147 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BJ	P06899	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	SOD3	P08294	240 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	CD14	P08571	375 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	IL3	P08700	152 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	CST2	P09228	141 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	UCHL1	P09936	223 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	IGKV1-13	P0DP09	117 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	SCGB1A1	P11684	91 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	TDGF1	P13385	188 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BO	P23527	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BB	P33778	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	FAU	P35544	74 aa	Known RBP	3.73	□□□□□ -1.81
SS18-223	ENST00000583595	KIR2DS4	P43632	304 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	CSNK1A1	P48729	337 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	RAB7A	P51149	207 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	FOXA1	P55317	472 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BD	P58876	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	UBE2G2	P60604	165 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BC	P62807	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	RAN	P62826	216 aa	Known RBP	3.73	□□□□□ -1.81
SS18-223	ENST00000583595	SP4	Q02446	784 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	PAX8	Q06710	450 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	MAPK14	Q16539	360 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	TAF9	Q16594	264 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST2H2BE	Q16778	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	3.73	□□□□□ -1.81
SS18-223	ENST00000583595	FHL5	Q5TD97	284 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	MFSD14C	Q5VZR4	134 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	NCBP2-AS2	Q69YL0	99 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	C12orf73	Q69YU5	71 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	ZNF343	Q6P1L6	599 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	UNQ9370/PRO34162	Q6UXP9	181 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	TMIGD1	Q6UXZ0	262 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	SLC36A1	Q7Z2H8	476 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	TRAPPC5	Q8IUR0	188 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	FBXO16	Q8IX29	292 aa	Predicted RBP	3.73	□□□□□ -1.81
SS18-223	ENST00000583595	ZNF567	Q8N184	647 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	OR4S1	Q8NGB4	309 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	OR2L2	Q8NH16	312 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	OR51Q1	Q8NH59	317 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	OR51A7	Q8NH64	312 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	OR5W2	Q8NH69	310 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	C15orf40	Q8WUR7	153 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	CDS1	Q92903	461 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BH	Q93079	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	MRGPRF	Q96AM1	343 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	ZNF75A	Q96N20	296 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	STAC	Q99469	402 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BN	Q99877	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BM	Q99879	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	HIST1H2BL	Q99880	126 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	DPY30	Q9C005	99 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	ATG5	Q9H1Y0	275 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	TMEM38A	Q9H6F2	299 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	UBE2Z	Q9H832	354 aa	Predicted RBP	3.73	□□□□□ -1.81
SS18-223	ENST00000583595	ZNF430	Q9H8G1	570 aa	Predicted RBP	3.73	□□□□□ -1.81
SS18-223	ENST00000583595	TPT1P8	Q9HAU6	139 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	POPDC3	Q9HBV1	291 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	SLC25A37	Q9NYZ2	338 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	CD84	Q9UIB8	345 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	ASF1A	Q9Y294	204 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	WIF1	Q9Y5W5	379 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	CIT	O14578	2027 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	DOCK1	Q14185	1865 aa		3.73	□□□□□ -1.81
SS18-223	ENST00000583595	MICAL3	Q7RTP6	2002 aa		3.72	□□□□□ -1.81
SS18-223	ENST00000583595	IGHV1OR15-1	A0A075B7D0	117 aa		3.72	□□□□□ -1.81
SS18-223	ENST00000583595	IGHV3OR16-10	A0A075B7F0	116 aa		3.72	□□□□□ -1.81
SS18-223	ENST00000583595		A0A087WWC5	75 aa		3.72	□□□□□ -1.81
SS18-223	ENST00000583595	ANKRD20A5P	A0PJZ0	165 aa		3.72	□□□□□ -1.81
SS18-223	ENST00000583595	PSMB11	A5LHX3	300 aa		3.72	□□□□□ -1.81
SS18-223	ENST00000583595	FAM183A	A6NL82	134 aa		3.72	□□□□□ -1.81
SS18-223	ENST00000583595	ZNF705G	A8MUZ8	300 aa	Predicted RBP	3.72	□□□□□ -1.81

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