RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GALMQ96C23 342 aa16.06■□□□□ 0.16
SHMT1-209ENST00000582653 RITA1Q96K30 269 aa16.06■□□□□ 0.16
SHMT1-209ENST00000582653 ABHD14AQ9BUJ0 271 aa16.06■□□□□ 0.16
SHMT1-209ENST00000582653 TMEM59Q9BXS4 323 aa16.06■□□□□ 0.16
SHMT1-209ENST00000582653 A0A0A6YYD4 124 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 SLC22A1O15245 554 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 YPEL1O60688 119 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 HSMCR30P0CW71 290 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 CD37P11049 281 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 SLC2A2P11168 524 aaPredicted RBP16.05■□□□□ 0.16
SHMT1-209ENST00000582653 CDX1P47902 265 aaPredicted RBP16.05■□□□□ 0.16
SHMT1-209ENST00000582653 QRFPP83859 136 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 HTD2P86397 168 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 HMGN3Q15651 99 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 KCNG3Q8TAE7 436 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 UFD1Q92890 307 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 YPEL2Q96QA6 119 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 GFI1Q99684 422 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 TM2D1Q9BX74 207 aa16.05■□□□□ 0.16
SHMT1-209ENST00000582653 MRPL20Q9BYC9 149 aaKnown RBP16.05■□□□□ 0.16
SHMT1-209ENST00000582653 TMEM14DPA8MWL7 114 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 CCL24O00175 119 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 MYF6P23409 242 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 CNTFRP26992 372 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 BLVRBP30043 206 aaPredicted RBP16.04■□□□□ 0.16
SHMT1-209ENST00000582653 SOX6P35712 828 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 OR3A3P47888 321 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 RPS25P62851 125 aaKnown RBP16.04■□□□□ 0.16
SHMT1-209ENST00000582653 KIR2DS1Q14954 304 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 P2RY14Q15391 338 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 TMEM91Q6ZNR0 172 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 RNF152Q8N8N0 203 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 IL1F10Q8WWZ1 152 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 RAX2Q96IS3 184 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 NABP2Q9BQ15 211 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 DUSP21Q9H596 190 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 TPRKBQ9Y3C4 175 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 COL7A1Q02388 2944 aa16.04■□□□□ 0.16
SHMT1-209ENST00000582653 ELANEP08246 267 aa16.03■□□□□ 0.16
SHMT1-209ENST00000582653 FOXE3Q13461 319 aa16.03■□□□□ 0.16
SHMT1-209ENST00000582653 MMDQ15546 238 aa16.03■□□□□ 0.16
SHMT1-209ENST00000582653 DEFB136Q30KP8 78 aa16.03■□□□□ 0.16
SHMT1-209ENST00000582653 SVOPQ8N4V2 548 aa16.03■□□□□ 0.16
SHMT1-209ENST00000582653 OR6M1Q8NGM8 313 aa16.03■□□□□ 0.16
SHMT1-209ENST00000582653 SETD6Q8TBK2 473 aa16.03■□□□□ 0.16
SHMT1-209ENST00000582653 CHMP1AQ9HD42 196 aaPredicted RBP16.03■□□□□ 0.16
SHMT1-209ENST00000582653 PLEKHJ1Q9NW61 149 aa16.03■□□□□ 0.16
SHMT1-209ENST00000582653 AK6Q9Y3D8 172 aaKnown RBP16.03■□□□□ 0.16
SHMT1-209ENST00000582653 LRRC42Q9Y546 428 aa16.03■□□□□ 0.16
SHMT1-209ENST00000582653 SOCS1O15524 211 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 RGS10O43665 173 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 RRP9O43818 475 aaKnown RBP16.02■□□□□ 0.16
SHMT1-209ENST00000582653 NAPSAO96009 420 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 ACTBP60709 375 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 CFHR3Q02985 330 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 TPBGQ13641 420 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 CXorf66Q5JRM2 361 aaPredicted RBP16.02■□□□□ 0.16
SHMT1-209ENST00000582653 ZNF833PQ6ZTB9 187 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 B9D2Q9BPU9 175 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 CCDC90BQ9GZT6 254 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 LPAR5Q9H1C0 372 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 ABRACLQ9P1F3 81 aa16.02■□□□□ 0.16
SHMT1-209ENST00000582653 ZNF107Q9UII5 783 aaPredicted RBP16.02■□□□□ 0.16
SHMT1-209ENST00000582653 SAA2-SAA4A0A096LPE2 208 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 ST8SIA5O15466 376 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 RGS11O94810 467 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 BPNT1O95861 308 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 IGF1P05019 195 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 SAA2P0DJI9 122 aaPredicted RBP16.01■□□□□ 0.15
SHMT1-209ENST00000582653 VDAC1P21796 283 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 MAP2K4P45985 399 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 RAB25P57735 213 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 DGCR2P98153 550 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 CD69Q07108 199 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 DCTN2Q13561 401 aaKnown RBP16.01■□□□□ 0.15
SHMT1-209ENST00000582653 LY6G6FQ5SQ64 297 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 C11orf87Q6NUJ2 197 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 ZNF880Q6PDB4 577 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 OR2AK2Q8NG84 335 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 OR8U1Q8NH10 309 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 KCTD7Q96MP8 289 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 HDHD3Q9BSH5 251 aaPredicted RBP16.01■□□□□ 0.15
SHMT1-209ENST00000582653 PARP12Q9H0J9 701 aaKnown RBP16.01■□□□□ 0.15
SHMT1-209ENST00000582653 PLGRKTQ9HBL7 147 aa16.01■□□□□ 0.15
SHMT1-209ENST00000582653 RAMP3O60896 148 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 IGHG4P01861 327 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 ARSBP15848 533 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 ZNF251Q9BRH9 671 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 CHCHD6Q9BRQ6 235 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 ANKRD60Q9BZ19 345 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 IFI27L2Q9H2X8 130 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 STEAP1Q9UHE8 339 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 AK3Q9UIJ7 227 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 ZNF580Q9UK33 172 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 WSB1Q9Y6I7 421 aa16■□□□□ 0.15
SHMT1-209ENST00000582653 SLC17A2O00624 439 aa15.99■□□□□ 0.15
SHMT1-209ENST00000582653 CPEP16870 476 aa15.99■□□□□ 0.15
SHMT1-209ENST00000582653 CRHBPP24387 322 aa15.99■□□□□ 0.15
SHMT1-209ENST00000582653 CLDN12P56749 244 aa15.99■□□□□ 0.15
SHMT1-209ENST00000582653 FABP5Q01469 135 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms