RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 EFNB1P98172 346 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 PCOLCEQ15113 449 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 C10orf128Q5T292 105 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 PDPNQ86YL7 162 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 AURKAIP1Q9NWT8 199 aaPredicted RBP13.25□□□□□ -0.29
CIITA-204ENST00000570546 AMTP48728 403 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 HLA-DRB5Q30154 266 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 GPR146Q96CH1 333 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 DANCRP0C864 163 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 CAMPP49913 170 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 TNXAQ16473 311 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 TEPPQ6URK8 271 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 TMEM251Q8N6I4 163 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 SAP25Q8TEE9 199 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 ZNF785A8K8V0 405 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 CDK2AP1O14519 115 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 PGA5P0DJD9 388 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 COX7A1P24310 79 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 VWCEQ96DN2 955 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 GPHA2Q96T91 129 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 WNT5BQ9H1J7 359 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 ZNF708P17019 499 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 NPY1RP25929 384 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 ZNF665Q9H7R5 613 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 RNF24Q9Y225 148 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 HBZP02008 142 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 FAM157CP0CG43 387 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 CD1BP29016 333 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 LYZP61626 148 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 PKIAP61925 76 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 ASPHD2Q6ICH7 369 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 ZNF645Q8N7E2 425 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 WIPI2Q9Y4P8 454 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 LRRC3CA6NJW4 275 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 TIAF1O95411 115 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 EFEMP2O95967 443 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 TIPARPQ7Z3E1 657 aaKnown RBP13.24□□□□□ -0.29
CIITA-204ENST00000570546 NFAM1Q8NET5 270 aaPredicted RBP13.24□□□□□ -0.29
CIITA-204ENST00000570546 RBKSQ9H477 322 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 A0A1W2PQM1 296 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 MELTFP08582 738 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 FCER1GP30273 86 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 PRDX2P32119 198 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 FLVCR1-AS1Q8TAF5 88 aa13.24□□□□□ -0.29
CIITA-204ENST00000570546 HELTA6NFD8 242 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 HPRT1P00492 218 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 MDKP21741 143 aaPredicted RBP13.23□□□□□ -0.29
CIITA-204ENST00000570546 UCP2P55851 309 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 CD81P60033 236 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 SAXO1Q8IYX7 474 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 AMMECR1Q9Y4X0 333 aaPredicted RBP13.23□□□□□ -0.29
CIITA-204ENST00000570546 A8MXK9 166 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 ZNF253O75346 499 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 COX19Q49B96 90 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 TPRX1Q8N7U7 411 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 APCDD1LQ8NCL9 501 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 DNASE2BQ8WZ79 361 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 SPSB2Q99619 263 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 PRDM14Q9GZV8 571 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 TRAV34A0A0B4J273 112 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 LOC390937A0A1W2PQ73 354 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 M0R143 59 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 HTR1DP28221 377 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 SPCS3P61009 180 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 RIPPLY2Q5TAB7 128 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 DHRS11Q6UWP2 260 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 IGFBP3P17936 291 aaPredicted RBP13.23□□□□□ -0.29
CIITA-204ENST00000570546 UCP3P55916 312 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 C1QL2Q7Z5L3 287 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 ABHD14AQ9BUJ0 271 aa13.23□□□□□ -0.29
CIITA-204ENST00000570546 RLFQ13129 1914 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 A0A087WV48 116 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 H0YL77 283 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 RAMP1O60894 148 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 TRGC2P03986 189 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 FAM3BP58499 235 aaPredicted RBP13.22□□□□□ -0.29
CIITA-204ENST00000570546 ZNF818PQ6ZRF7 136 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 POM121Q96HA1 1249 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 DLL3Q9NYJ7 618 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 TRAV14DV4A0A0A6YYC5 116 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 OR51B2Q9Y5P1 312 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 A0A1W2PPE3 182 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 STARD6P59095 220 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 LINC00518Q8N0U6 118 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 TMEM204Q9BSN7 226 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 M0R296 226 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 M0R2Z0 102 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 IER3P46695 156 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 NPBWR2P48146 333 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 RND3P61587 244 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 VPS25Q9BRG1 176 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 PKIBQ9C010 78 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 CBY1Q9Y3M2 126 aa13.22□□□□□ -0.29
CIITA-204ENST00000570546 FHITP49789 147 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 MRPL54Q6P161 138 aaKnown RBP13.21□□□□□ -0.29
CIITA-204ENST00000570546 NHLRC2Q8NBF2 726 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 OR5AU1Q8NGC0 362 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 OR10J1P30954 320 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 C10orf113Q5VZT2 155 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 LRP11Q86VZ4 500 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms