RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 NAGKQ9UJ70 344 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 A0A1B0GU03 582 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 PROB1E7EW31 1015 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 G6PCP35575 357 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 PTTG1IPP53801 180 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 RAC1P63000 192 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 CCL7P80098 99 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 CALHM1Q8IU99 346 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 TMEM171Q8WVE6 324 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 RAB24Q969Q5 203 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 HSPB9Q9BQS6 159 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 TM2D1Q9BX74 207 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 CFHR5Q9BXR6 569 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 SRD5A3Q9H8P0 318 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 TMEM9BQ9NQ34 198 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.82□□□□□ -0.84
CLN3-238ENST00000569430 DOCK10Q96BY6 2186 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 A0A087WWC5 75 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 IGKV3D-11A0A0A0MRZ8 115 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 SLC22A20A6NK97 555 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 C2CD4DB7Z1M9 353 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 OR7C2O60412 319 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 PCP4P48539 62 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 CYB561P49447 251 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 P2RY6Q15077 328 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 NANOS1Q8WY41 292 aaKnown RBP9.82□□□□□ -0.84
CLN3-238ENST00000569430 CLCF1Q9UBD9 225 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 CLDN16Q9Y5I7 305 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 DENND4AQ7Z401 1863 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 PRR19A6NJB7 356 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 EFNA2O43921 213 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 MPLP40238 635 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 SERF2P84101 59 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 LBHQ53QV2 105 aaPredicted RBP9.82□□□□□ -0.84
CLN3-238ENST00000569430 TAF15Q92804 592 aaKnown RBP eCLIP9.82□□□□□ -0.84
CLN3-238ENST00000569430 CCDC74BQ96LY2 380 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 VPS25Q9BRG1 176 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 NDUFAF3Q9BU61 184 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 OR2H1Q9GZK4 316 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 OR2D2Q9H210 308 aa9.82□□□□□ -0.84
CLN3-238ENST00000569430 BOKQ9UMX3 212 aaPredicted RBP9.82□□□□□ -0.84
CLN3-238ENST00000569430 SH2D1BO14796 132 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 LYL1P12980 280 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 HOXA6P31267 233 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 IER3P46695 156 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 OR3A1P47881 315 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 SPCS3P61009 180 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 GNG3P63215 75 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 HERPUD1Q15011 391 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 GCNT2Q8N0V5 402 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 OR5D13Q8NGL4 314 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 GTF3AQ92664 365 aaKnown RBP9.81□□□□□ -0.84
CLN3-238ENST00000569430 ZNF501Q96CX3 271 aaPredicted RBP9.81□□□□□ -0.84
CLN3-238ENST00000569430 TMEM147Q9BVK8 224 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 ZNF331Q9NQX6 463 aaPredicted RBP9.81□□□□□ -0.84
CLN3-238ENST00000569430 TMEM38BQ9NVV0 291 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 CISD1Q9NZ45 108 aaKnown RBP9.81□□□□□ -0.84
CLN3-238ENST00000569430 CTXND1A0A1B0GTU2 59 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 CLPSP04118 112 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 EXT1Q16394 746 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 TIGITQ495A1 244 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 Q6ZN92 141 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 C1QL4Q86Z23 238 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 CNEP1R1Q8N9A8 125 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 OR10G8Q8NGN5 311 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 SSMEM1Q8WWF3 244 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 APOBEC3DQ96AK3 386 aaPredicted RBP9.81□□□□□ -0.84
CLN3-238ENST00000569430 ANAPC16Q96DE5 110 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 VSIRQ9H7M9 311 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 SDF2L1Q9HCN8 221 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 PLA2G2EQ9NZK7 142 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 IGKV1D-13A0A0B4J2D9 117 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 C5orf67F2Z3F1 127 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 SRSF10O75494 262 aaKnown RBP9.81□□□□□ -0.84
CLN3-238ENST00000569430 NGFP01138 241 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 AMBPP02760 352 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 IGKV1-13P0DP09 117 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 RAC3P60763 192 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 OR8B8Q15620 311 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 GALMQ96C23 342 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 DUSP23Q9BVJ7 150 aa9.81□□□□□ -0.84
CLN3-238ENST00000569430 ARHGAP21Q5T5U3 1957 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 C20orf202A1L168 122 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 HSBP1L1C9JCN9 74 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 SYNGR1O43759 233 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 CER1O95813 267 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 PRR27Q6MZM9 219 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 KMT5CQ86Y97 462 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 OR5AU1Q8NGC0 362 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 POC1BQ8TC44 478 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 ABHD5Q8WTS1 349 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 C18orf12Q96KH6 178 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 CIB3Q96Q77 187 aaPredicted RBP9.8□□□□□ -0.84
CLN3-238ENST00000569430 FSCN3Q9NQT6 498 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 IL36RNQ9UBH0 155 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 AKAP6Q13023 2319 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 CA11O75493 328 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 CD33P20138 364 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 RAB4AP20338 218 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 CFPP27918 469 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms