RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 C3orf36Q3SXR2 165 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 KRBOX4Q5JUW0 171 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 FAM180AQ6UWF9 173 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 OR13A1Q8NGR1 328 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 LSM10Q969L4 123 aaKnown RBP16.98■□□□□ 0.31
CLN3-230ENST00000568076 MUCL1Q96DR8 90 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 TSNAXQ99598 290 aaKnown RBP16.98■□□□□ 0.31
CLN3-230ENST00000568076 NKX6-2Q9C056 277 aaPredicted RBP16.98■□□□□ 0.31
CLN3-230ENST00000568076 TOLLIPQ9H0E2 274 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 RFNGQ9Y644 331 aa16.98■□□□□ 0.31
CLN3-230ENST00000568076 LOC105371267A0A1B0GV96 52 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 SRRM5B3KS81 715 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 F8W036 122 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 TSPAN4O14817 238 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 SSTR5P35346 364 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 MZT1Q08AG7 82 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 VHLLQ6RSH7 139 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 PUSL1Q8N0Z8 303 aaKnown RBP16.97■□□□□ 0.31
CLN3-230ENST00000568076 ZNF645Q8N7E2 425 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 OR5C1Q8NGR4 320 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 CACNG5Q9UF02 275 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 CACFD1Q9UGQ2 172 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 ATMQ13315 3056 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 PIGBOS1A0A0B4J2F0 54 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 MEX3AA1L020 520 aaKnown RBP16.97■□□□□ 0.31
CLN3-230ENST00000568076 A8MXE2 369 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 WRBO00258 174 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 PRDX2P32119 198 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 GLRXP35754 106 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 RNASE11Q8TAA1 199 aaKnown RBP16.97■□□□□ 0.31
CLN3-230ENST00000568076 OR2D2Q9H210 308 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 TP53TG5Q9Y2B4 290 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 SSUH2Q9Y2M2 353 aa16.97■□□□□ 0.31
CLN3-230ENST00000568076 CARHSP1Q9Y2V2 147 aaKnown RBP16.97■□□□□ 0.31
CLN3-230ENST00000568076 DCHS1Q96JQ0 3298 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 IGKV1D-17A0A075B6S4 117 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 FAM74A7A6NL05 159 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 C9JQL5 133 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 ATP6V1G2-DDX39BF2Z307 99 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 RNASEK-C17orf49H0YIS7 233 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 ZNF737O75373 536 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 CD5P06127 495 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 BMP5P22003 454 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 PPP1CCP36873 323 aaKnown RBP16.96■□□□□ 0.31
CLN3-230ENST00000568076 DYNLT3P51808 116 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 EIF4EBP1Q13541 118 aaPredicted RBP16.96■□□□□ 0.31
CLN3-230ENST00000568076 FAM74A3Q4VXF1 159 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 GCSAMQ8N6F7 178 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 OR2V2Q96R30 315 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 DCTN5Q9BTE1 182 aa16.96■□□□□ 0.31
CLN3-230ENST00000568076 CADP27708 2225 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 TDGF1P3P51864 188 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 KLF3P57682 345 aaPredicted RBP16.95■□□□□ 0.3
CLN3-230ENST00000568076 BAXQ07812 192 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 ZNF266Q14584 549 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 MIDNQ504T8 468 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 SPAG16Q8N0X2 631 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 TMEM217Q8N7C4 229 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 MEGF10Q96KG7 1140 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 DMXL2Q8TDJ6 3036 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 IGLV3-9A0A075B6K5 115 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 F12P00748 615 aaPredicted RBP16.95■□□□□ 0.3
CLN3-230ENST00000568076 ATP6V0CP27449 155 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 CFHR2P36980 270 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 RPL30P62888 115 aaKnown RBP16.95■□□□□ 0.3
CLN3-230ENST00000568076 TAGLNQ01995 201 aaKnown RBP16.95■□□□□ 0.3
CLN3-230ENST00000568076 PAX5Q02548 391 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 TMEM182Q6ZP80 229 aaPredicted RBP16.95■□□□□ 0.3
CLN3-230ENST00000568076 SVBPQ8N300 66 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 OR10Z1Q8NGY1 313 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 LURAP1Q96LR2 239 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 SEC11CQ9BY50 192 aa16.95■□□□□ 0.3
CLN3-230ENST00000568076 MED19A0JLT2 244 aaPredicted RBP16.94■□□□□ 0.3
CLN3-230ENST00000568076 FAM157AC9JC47 383 aa16.94■□□□□ 0.3
CLN3-230ENST00000568076 H3BP45 60 aa16.94■□□□□ 0.3
CLN3-230ENST00000568076 CCKARP32238 428 aa16.94■□□□□ 0.3
CLN3-230ENST00000568076 CAMLGP49069 296 aa16.94■□□□□ 0.3
CLN3-230ENST00000568076 ZNF616Q08AN1 781 aa16.94■□□□□ 0.3
CLN3-230ENST00000568076 ZNF808Q8N4W9 903 aaPredicted RBP16.94■□□□□ 0.3
CLN3-230ENST00000568076 Q8NA96 180 aa16.94■□□□□ 0.3
CLN3-230ENST00000568076 RFESDQ8TAC1 157 aa16.94■□□□□ 0.3
CLN3-230ENST00000568076 C19orf12Q9NSK7 152 aa16.94■□□□□ 0.3
CLN3-230ENST00000568076 IGHV3OR15-7A0A075B7D8 119 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 IGHV3-43A0A0B4J1X8 118 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 C15orf65H3BRN8 121 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 SPRY3O43610 288 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 RAMP3O60896 148 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 IGHV3-43DP0DP04 118 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 CD80P33681 288 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 FOXC1Q12948 553 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 EDDM3AQ14507 147 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 MOGAT3Q86VF5 341 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 DOLPP1Q86YN1 238 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 FGFRL1Q8N441 504 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 ZBTB34Q8NCN2 500 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 RNF212BA8MTL3 300 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 K7N7A8 449 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 TXNL1O43396 289 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 TSPAN15O95858 294 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 SNCAP37840 140 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms