RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	OR51G1	Q8NGK1	321 aa		13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433	RAB24	Q969Q5	203 aa		13.81	□□□□□ -0.2
SHMT2-231	ENST00000557433		J3QT63	122 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	HS3ST1	O14792	307 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	SLC31A2	O15432	143 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	LY86	O95711	162 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	IGLV2-14	P01704	120 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	SRP14	P37108	136 aa	Known RBP	13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	ACOT6	Q3I5F7	207 aa	Predicted RBP	13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	C4orf17	Q53FE4	359 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	SSX7	Q7RTT5	188 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	RDH5	Q92781	318 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	POM121L2	Q96KW2	1035 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	C2orf88	Q9BSF0	95 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	TMEM147	Q9BVK8	224 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	ZNF552	Q9H707	407 aa	Predicted RBP	13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	PRDM6	Q9NQX0	595 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	ATXN7	O15265	892 aa	Predicted RBP	13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	HRAS	P01112	189 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	TYMS	P04818	313 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	FOSL1	P15407	271 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	HOXA6	P31267	233 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	GALR1	P47211	349 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	CYB561	P49447	251 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	TAS2R60	P59551	318 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	ZNF585B	Q52M93	769 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	BEND2	Q8NDZ0	799 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	TMEM170A	Q8WVE7	144 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	CRIM1	Q9NZV1	1036 aa		13.8	□□□□□ -0.2
SHMT2-231	ENST00000557433	ARGFX	A6NJG6	315 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	SOX15	O60248	233 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	SYNGR4	O95473	234 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	RAB4B	P61018	213 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	RPL23	P62829	140 aa	Known RBP	13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	SPANXN5	Q5MJ07	72 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433		Q6P435	159 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	PPP1R32	Q7Z5V6	425 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	RHOV	Q96L33	236 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	SSX3	Q99909	188 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	OR51I2	Q9H344	312 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	HSPB7	Q9UBY9	170 aa		13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	RBM7	Q9Y580	266 aa	Known RBP	13.79	□□□□□ -0.2
SHMT2-231	ENST00000557433	CACNA1E	Q15878	2313 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	AMBP	P02760	352 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	SERPINA7	P05543	415 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	COL10A1	Q03692	680 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	TNFRSF9	Q07011	255 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433		Q3ZCU0	254 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	ZNF497	Q6ZNH5	498 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	RPP25L	Q8N5L8	163 aa	Known RBP	13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	IL1F10	Q8WWZ1	152 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	MRPL37	Q9BZE1	423 aa	Known RBP	13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	OR1A1	Q9P1Q5	309 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	GAB2	Q9UQC2	676 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	LAMP3	Q9UQV4	416 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	UBE2L5P	A0A1B0GUS4	154 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433		J3QW42	95 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	GGCT	O75223	188 aa	Known RBP	13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	GZMB	P10144	247 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	CCKAR	P32238	428 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	ELL	P55199	621 aa	Predicted RBP	13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	LCN2	P80188	198 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	CISD2	Q8N5K1	135 aa	Known RBP	13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	TCTEX1D1	Q8N7M0	179 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	PRRG4	Q9BZD6	226 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	UBE2Z	Q9H832	354 aa	Predicted RBP	13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	MBNL3	Q9NUK0	354 aa	Known RBP	13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	B4GALT7	Q9UBV7	327 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	PPP1R3C	Q9UQK1	317 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	WIPI2	Q9Y4P8	454 aa		13.78	□□□□□ -0.2
SHMT2-231	ENST00000557433	XKRY2	A2RUG3	117 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	GDF9	O60383	454 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	IGHV3-9	P01782	118 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	CCL4	P13236	92 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	CD99	P14209	185 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	COX5A	P20674	150 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	IZUMO4	Q1ZYL8	232 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	KCNIP4	Q6PIL6	250 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	FGFRL1	Q8N441	504 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	CIB3	Q96Q77	187 aa	Predicted RBP	13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	DEPP	Q9NTK1	212 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	PILRB	Q9UKJ0	227 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	KCNS2	Q9ULS6	477 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433	POLDIP2	Q9Y2S7	368 aa		13.77	□□□□□ -0.21
SHMT2-231	ENST00000557433		A0A096LPE4	126 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433		A0A1W2PPZ6	126 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433		B4E171	279 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	CLDN1	O95832	211 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	IGFBP4	P22692	258 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	TSPAN7	P41732	249 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	ACTL10	Q5JWF8	245 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	SLC23A3	Q6PIS1	610 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	TMEM18	Q96B42	140 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	APH1A	Q96BI3	265 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	MEGF10	Q96KG7	1140 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	FAM173A	Q9BQD7	235 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	IER2	Q9BTL4	223 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	RTL8A	Q9BWD3	113 aa		13.76	□□□□□ -0.21
SHMT2-231	ENST00000557433	PARL	Q9H300	379 aa		13.76	□□□□□ -0.21

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