RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 OPN1MW3P0DN78 364 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 FUT3P21217 361 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 FGF12P61328 243 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 TSPAN5P62079 268 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 GNG3P63215 75 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 PAX2Q02962 417 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 PDCD1Q15116 288 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 SURF2Q15527 256 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-230ENST00000557427 MPV17LQ2QL34 196 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 PIGYQ3MUY2 71 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 WDR25Q64LD2 544 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-230ENST00000557427 BTNL3Q6UXE8 466 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 BRD3OSQ6XYD6 125 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 OVCH2Q7RTZ1 564 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 WDR86Q86TI4 376 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 ZNF573Q86YE8 665 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 MARCH1Q8TCQ1 289 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 LRRC29Q8WV35 223 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 CMSS1Q9BQ75 279 aaKnown RBP10.25□□□□□ -0.77
SHMT2-230ENST00000557427 SULT4A1Q9BR01 284 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 FAAP24Q9BTP7 215 aa10.25□□□□□ -0.77
SHMT2-230ENST00000557427 TRAV40A0A0B4J280 105 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 A0A0B4J2A0 478 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 KIR2DS1A0A191URI9 304 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 C9orf170A2RU37 121 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 A8MXK9 166 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 FSTL3O95633 263 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 LHBP01229 141 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 HLA-AP01891 365 aaKnown RBP10.24□□□□□ -0.77
SHMT2-230ENST00000557427 FCGR3AP08637 254 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 BCL3P20749 454 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 C4BPBP20851 252 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 CD34P28906 385 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 HAAOP46952 286 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 GPM6AP51674 278 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 H2BFSP57053 126 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 PPP1R1AQ13522 171 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 LGALSLQ3ZCW2 172 aaPredicted RBP10.24□□□□□ -0.77
SHMT2-230ENST00000557427 TMEM128Q5BJH2 165 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 OXLD1Q5BKU9 147 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 ZNF841Q6ZN19 808 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 LINC00596Q86U02 117 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 GCSAMQ8N6F7 178 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 MITD1Q8WV92 249 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 ZDHHC16Q969W1 377 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 CYYR1Q96J86 154 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 EHFQ9NZC4 300 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 SHPKQ9UHJ6 478 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 ZNF230Q9UIE0 474 aaPredicted RBP10.24□□□□□ -0.77
SHMT2-230ENST00000557427 ANXA10Q9UJ72 324 aa10.24□□□□□ -0.77
SHMT2-230ENST00000557427 IGHV2-70DA0A0C4DH43 119 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 HMSDA8MTL9 139 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 TNFRSF13BO14836 293 aaPredicted RBP10.23□□□□□ -0.77
SHMT2-230ENST00000557427 DUS4LO95620 317 aaKnown RBP10.23□□□□□ -0.77
SHMT2-230ENST00000557427 PPIAL4GP0DN37 164 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 NPBWR2P48146 333 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 ARPC4P59998 168 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 IL24Q13007 206 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 SRSF7Q16629 238 aaKnown RBP eCLIP10.23□□□□□ -0.77
SHMT2-230ENST00000557427 LY6G6FQ5SQ64 297 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 AADACL3Q5VUY0 350 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 C11orf88Q6PI97 169 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 WDR82Q6UXN9 313 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 ZNF767PQ75MW2 155 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 FAM90A1Q86YD7 464 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 UXS1Q8NBZ7 420 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 ADAD2Q8NCV1 583 aaKnown RBP10.23□□□□□ -0.77
SHMT2-230ENST00000557427 OR5T2Q8NGG2 359 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 OR5M8Q8NGP6 311 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 SLAMF9Q96A28 289 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 FAM210AQ96ND0 272 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 CCL13Q99616 98 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 PHB2Q99623 299 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 RTL8AQ9BWD3 113 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 RCC2Q9P258 522 aaKnown RBP10.23□□□□□ -0.77
SHMT2-230ENST00000557427 CTSZQ9UBR2 303 aa10.23□□□□□ -0.77
SHMT2-230ENST00000557427 DOCK11Q5JSL3 2073 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 IGKV1D-8A0A087WSZ0 117 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 C22orf46C9J442 243 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 J3QT63 122 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 NDUFA2O43678 99 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 SIX6O95475 246 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 IL13RA2Q14627 380 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 LIN54Q6MZP7 749 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 Q6ZS49 121 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 SCCPDHQ8NBX0 429 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 MAFIPQ8WZ33 124 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 TMEM230Q96A57 120 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 WWC2-AS2Q96NR7 200 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 HDHD3Q9BSH5 251 aaPredicted RBP10.22□□□□□ -0.77
SHMT2-230ENST00000557427 OR51I2Q9H344 312 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 C5orf66Q9H5L9 145 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 ZNF286AQ9HBT8 521 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 C12orf4Q9NQ89 552 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 NECAP2Q9NVZ3 263 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 MTCH1Q9NZJ7 389 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 ZNF581Q9P0T4 197 aa10.22□□□□□ -0.77
SHMT2-230ENST00000557427 TET2Q6N021 2002 aaPredicted RBP10.22□□□□□ -0.77
SHMT2-230ENST00000557427 OR5H14A6NHG9 310 aa10.21□□□□□ -0.77
SHMT2-230ENST00000557427 DBX1A6NMT0 343 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms