RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SAMD12Q8N8I0 201 aa10.93□□□□□ -0.66
SHMT2-228ENST00000557302 OR4F5Q8NH21 305 aa10.93□□□□□ -0.66
SHMT2-228ENST00000557302 ABHD14AQ9BUJ0 271 aa10.93□□□□□ -0.66
SHMT2-228ENST00000557302 ELF5Q9UKW6 265 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-228ENST00000557302 TRAV18A0A075B6X5 111 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 A0A1W2PPI3 338 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 TIMM23O14925 209 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 FABP7O15540 132 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 CHST1O43916 411 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 GAPDHP04406 335 aaKnown RBP10.92□□□□□ -0.66
SHMT2-228ENST00000557302 LPLP06858 475 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 SCTP09683 121 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 DTYMKP23919 212 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 ZBTB25P24278 435 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 CEACAM6P40199 344 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 PITPNAQ00169 270 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 RELBQ01201 579 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 ZNF816Q0VGE8 651 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-228ENST00000557302 DIAPH2-AS1Q14236 149 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 PNLIPRP3Q17RR3 467 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 ZNF260Q3ZCT1 412 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 AWAT1Q58HT5 328 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 TMEM219Q86XT9 240 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 IZUMO1Q8IYV9 350 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 LYG1Q8N1E2 194 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 OR2AK2Q8NG84 335 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 OR4A4PQ8NGN8 299 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 RAB2BQ8WUD1 216 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 NUDCD2Q8WVJ2 157 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 ACOT12Q8WYK0 555 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 MAFIPQ8WZ33 124 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 S100A16Q96FQ6 103 aaKnown RBP10.92□□□□□ -0.66
SHMT2-228ENST00000557302 ABCG5Q9H222 651 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 SLC23A1Q9UHI7 598 aa10.92□□□□□ -0.66
SHMT2-228ENST00000557302 ZNF230Q9UIE0 474 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-228ENST00000557302 TENM1Q9UKZ4 2725 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 A0A1B0GUS0 222 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 NOL3O60936 208 aaKnown RBP10.91□□□□□ -0.66
SHMT2-228ENST00000557302 MDKP21741 143 aaPredicted RBP10.91□□□□□ -0.66
SHMT2-228ENST00000557302 CD24P25063 80 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 REG1BP48304 166 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 ZNF137PP52743 207 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 TMBIM6P55061 237 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 SRSF7Q16629 238 aaKnown RBP eCLIP10.91□□□□□ -0.66
SHMT2-228ENST00000557302 CCBE1Q6UXH8 406 aaPredicted RBP10.91□□□□□ -0.66
SHMT2-228ENST00000557302 Q6ZS49 121 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 Q6ZSV7 163 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 MOB3BQ86TA1 216 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 DRAM1Q8N682 238 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 OR4C13Q8NGP0 309 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 OR56B4Q8NH76 319 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 CAPSLQ8WWF8 208 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 AP3S1Q92572 193 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 ST6GALNAC6Q969X2 333 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 BCL7BQ9BQE9 202 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 NPFFR1Q9GZQ6 430 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 BEX1Q9HBH7 125 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 OR1A1Q9P1Q5 309 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 COMMD3Q9UBI1 195 aa10.91□□□□□ -0.66
SHMT2-228ENST00000557302 IGHV1-3A0A0C4DH29 117 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 IGKV1-6A0A0C4DH72 117 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 ITGB1BP1O14713 200 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 TXNL1O43396 289 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 XRCC3O43542 346 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 TSPAN9O75954 239 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 DIRAS3O95661 229 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 GSTT2P0CG29 244 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 GSTT2BP0CG30 244 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 FAM106CPP0CH98 169 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 ZNF182P17025 639 aaPredicted RBP10.9□□□□□ -0.66
SHMT2-228ENST00000557302 HERPUD1Q15011 391 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 THNSL2Q86YJ6 484 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 TGIF2LXQ8IUE1 241 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 C3orf56Q8N813 242 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 RTN4IP1Q8WWV3 396 aaPredicted RBP10.9□□□□□ -0.66
SHMT2-228ENST00000557302 EDARADDQ8WWZ3 215 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 CFHR4Q92496 578 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 AKR1E2Q96JD6 320 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 CMTM3Q96MX0 182 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 CABLES2Q9BTV7 478 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 ST6GALNAC5Q9BVH7 336 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 AUNIPQ9H7T9 357 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 MMP24Q9Y5R2 645 aa10.9□□□□□ -0.66
SHMT2-228ENST00000557302 CLPSL1A2RUU4 121 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 FAM90A9PA6NNJ1 464 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 BET1O15155 118 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 ST8SIA5O15466 376 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 LANCL1O43813 399 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 SSX5O60225 188 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 APOA1P02647 267 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 SNRNP70P08621 437 aaKnown RBP10.89□□□□□ -0.67
SHMT2-228ENST00000557302 HES1Q14469 280 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 HABP2Q14520 560 aaPredicted RBP10.89□□□□□ -0.67
SHMT2-228ENST00000557302 SPCS2Q15005 226 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 IGSF11Q5DX21 431 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 TMEM69Q5SWH9 247 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 MZT2AQ6P582 158 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 C16orf82Q7Z2V1 217 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 DTX3Q8N9I9 347 aa10.89□□□□□ -0.67
SHMT2-228ENST00000557302 OR10J5Q8NHC4 309 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms