RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TAAR3PQ9P1P4 343 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 MRPS18CQ9Y3D5 142 aaKnown RBP4.72□□□□□ -1.65
LIMA1-215ENST00000552823 NOTCH2Q04721 2471 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-215ENST00000552823 CEBPZOSA8MTT3 80 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 C12orf77C9JDV5 145 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 GPR137BO60478 399 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 JTBO76095 146 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 HBZP02008 142 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 CRYAAP02489 173 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 FAM87AP0C7U9 286 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 RAC2P15153 192 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF14P17017 642 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-215ENST00000552823 F2RP25116 425 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 RPL30P62888 115 aaKnown RBP4.71□□□□□ -1.65
LIMA1-215ENST00000552823 SURF2Q15527 256 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF674Q2M3X9 581 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 ACSF3Q4G176 576 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-215ENST00000552823 PCSK4Q6UW60 755 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 Q6ZT83 130 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 DRAM1Q8N682 238 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 ITLN1Q8WWA0 313 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 ZDHHC16Q969W1 377 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 STARD4Q96DR4 205 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 C14orf79Q96F83 325 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 OR2V2Q96R30 315 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 FAM212BQ9NTI7 297 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-215ENST00000552823 AURKAIP1Q9NWT8 199 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-215ENST00000552823 PSENENQ9NZ42 101 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 ANAPC10Q9UM13 185 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 NAV3Q8IVL0 2385 aa4.71□□□□□ -1.65
LIMA1-215ENST00000552823 IGHV1-18A0A0C4DH31 117 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 LOC105371267A0A1B0GV96 52 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 ZNF727A8MUV8 499 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 C17orf98A8MV24 154 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 H7C1Q1 480 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 DNASE2O00115 360 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-215ENST00000552823 RRP8O43159 456 aaKnown RBP4.71□□□□□ -1.66
LIMA1-215ENST00000552823 FCGR3BO75015 233 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 NAPSAO96009 420 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 IFNA17P01571 189 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 PRB4P10163 310 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-215ENST00000552823 NDUFB7P17568 137 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 MPZP25189 248 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 EIF5AP63241 154 aaKnown RBP4.71□□□□□ -1.66
LIMA1-215ENST00000552823 TCF15Q12870 199 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 GUK1Q16774 197 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 AKR1C8PQ5T2L2 129 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 ADAM5Q6NVV9 412 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 ZNF474Q6S9Z5 364 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-215ENST00000552823 ASCL4Q6XD76 172 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 OR10Z1Q8NGY1 313 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 NUDT16L1Q9BRJ7 211 aaKnown RBP4.71□□□□□ -1.66
LIMA1-215ENST00000552823 RSRP1Q9BUV0 290 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 VSIRQ9H7M9 311 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 C19orf12Q9NSK7 152 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 GNG13Q9P2W3 67 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 POLDIP2Q9Y2S7 368 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 PTPN13Q12923 2485 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 IGHV2OR16-5A0A0B4J2B6 119 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 UBE2L5PA0A1B0GUS4 154 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 H7C2Y5 167 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 M0R1X1 148 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 APELAP0DMC3 54 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 MYOD1P15172 320 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 REG1BP48304 166 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 IL15RAQ13261 267 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 KIAA0141Q14154 515 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-215ENST00000552823 MPV17LQ2QL34 196 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 RPL39P5Q59GN2 51 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 Q6P435 159 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 CCDC54Q8NEL0 328 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 SCGB1C1Q8TD33 95 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 GALMQ96C23 342 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 C18orf12Q96KH6 178 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 CCL13Q99616 98 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 NRIP2Q9BQI9 281 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 AIFM2Q9BRQ8 373 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 TMEM204Q9BSN7 226 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 CLCF1Q9UBD9 225 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 TMED3Q9Y3Q3 217 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 MMP24Q9Y5R2 645 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 WSB1Q9Y6I7 421 aa4.71□□□□□ -1.66
LIMA1-215ENST00000552823 ASH1LQ9NR48 2969 aaKnown RBP4.71□□□□□ -1.66
LIMA1-215ENST00000552823 A0A1W2PPE2 198 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 ZNF891A8MT65 544 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-215ENST00000552823 PRR33A8MZF0 331 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 S1PR2O95136 353 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 IFNA5P01569 189 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 VDAC1P21796 283 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 F2RL1P55085 397 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 NKX6-1P78426 367 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-215ENST00000552823 ARL16Q0P5N6 197 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 ZNF324BQ6AW86 544 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-215ENST00000552823 SEM1Q6ZVN7 128 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 PIP4P1Q86T03 277 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 SVBPQ8N300 66 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 PRSS33Q8NF86 280 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 H1FXQ92522 213 aaKnown RBP4.7□□□□□ -1.66
LIMA1-215ENST00000552823 CCL17Q92583 94 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms