RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CEACAM1P13688 526 aa12.33□□□□□ -0.43
LIMS1-215ENST00000544547 ZNF32P17041 273 aa12.33□□□□□ -0.43
LIMS1-215ENST00000544547 ZNF738Q8NE65 137 aa12.33□□□□□ -0.43
LIMS1-215ENST00000544547 CLDND2Q8NHS1 167 aa12.33□□□□□ -0.43
LIMS1-215ENST00000544547 CRISPLD2Q9H0B8 497 aa12.33□□□□□ -0.43
LIMS1-215ENST00000544547 SSUH2Q9Y2M2 353 aa12.33□□□□□ -0.43
LIMS1-215ENST00000544547 LHFPL6Q9Y693 200 aa12.33□□□□□ -0.43
LIMS1-215ENST00000544547 NKX6-3A6NJ46 265 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 CEACAM16Q2WEN9 425 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 Q56UQ5 140 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 OR1L6Q8NGR2 347 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 OR1F12Q8NHA8 337 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 A0A0A6YYD4 124 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 RAB29O14966 203 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 CCL7P80098 99 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 VASH2Q86V25 355 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 UBALD2Q8IYN6 164 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 ROS1P08922 2347 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 MS4A18H0YCH9 400 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 SCTP09683 121 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 GZMBP10144 247 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 MS4A18Q3C1V0 323 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 OR1L3Q8NH93 324 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 OR4C12Q96R67 309 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 KLHDC3Q9BQ90 382 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 TPPP3Q9BW30 176 aa12.33□□□□□ -0.44
LIMS1-215ENST00000544547 RIMS4Q9H426 269 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-215ENST00000544547 TGFBR3LH3BV60 316 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 TNFSF11O14788 317 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 DLEU1O43261 78 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 SFTPCP11686 197 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 C9orf40Q8IXQ3 194 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 SLC22A18ASQ8N1D0 253 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 OR2V1Q8NHB1 315 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 IMMP2LQ96T52 175 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 KCNK17Q96T54 332 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 POLEQ07864 2286 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 TCF20Q9UGU0 1960 aaKnown RBP12.32□□□□□ -0.44
LIMS1-215ENST00000544547 CAMPP49913 170 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 SRSF4Q08170 494 aaKnown RBP12.32□□□□□ -0.44
LIMS1-215ENST00000544547 STUMQ69YW2 141 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 RCC1LQ96I51 464 aaKnown RBP12.32□□□□□ -0.44
LIMS1-215ENST00000544547 SDF2L1Q9HCN8 221 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 CISD1Q9NZ45 108 aaKnown RBP12.32□□□□□ -0.44
LIMS1-215ENST00000544547 TRIB1Q96RU8 372 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 OR2J1Q9GZK6 312 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 PRDM13Q9H4Q3 707 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 WASHC3Q9Y3C0 194 aa12.32□□□□□ -0.44
LIMS1-215ENST00000544547 TMEM11P17152 192 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 FAM166AQ6J272 317 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 ACSM6Q6P461 480 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 ZNF573Q86YE8 665 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CISD2Q8N5K1 135 aaKnown RBP12.31□□□□□ -0.44
LIMS1-215ENST00000544547 TMEM208Q9BTX3 173 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 MTCL1Q9Y4B5 1905 aaKnown RBP12.31□□□□□ -0.44
LIMS1-215ENST00000544547 A8MWP6 167 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 WDR61Q9GZS3 305 aaKnown RBP12.31□□□□□ -0.44
LIMS1-215ENST00000544547 SHANK1Q9Y566 2161 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CNIH1O95406 144 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CBLN1P23435 193 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 IL3RAP26951 378 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 DMWDQ09019 674 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 TMPRSS7Q7RTY8 843 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 KIAA2026Q5HYC2 2103 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CTXND1A0A1B0GTU2 59 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CT45A6P0DMU7 189 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CT45A5P0DMU8 189 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CT45A7P0DMV0 189 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 DEFA4P12838 97 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 ARR3P36575 388 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CEACAM6P40199 344 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 UCP3P55916 312 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CT45A1Q5HYN5 189 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.31□□□□□ -0.44
LIMS1-215ENST00000544547 CT45A3Q8NHU0 189 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 ANGPTL4Q9BY76 406 aa12.31□□□□□ -0.44
LIMS1-215ENST00000544547 A0A1B0GU03 582 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 SH2D1BO14796 132 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 HOXC4P09017 264 aaPredicted RBP12.3□□□□□ -0.44
LIMS1-215ENST00000544547 SUMO3P55854 103 aaPredicted RBP12.3□□□□□ -0.44
LIMS1-215ENST00000544547 RFESDQ8TAC1 157 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 ATP6V1FQ16864 119 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 WIPI1Q5MNZ9 446 aaPredicted RBP12.3□□□□□ -0.44
LIMS1-215ENST00000544547 SPATA46Q5T0L3 261 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 WNT10AQ9GZT5 417 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 MTCH2Q9Y6C9 303 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 PMELP40967 661 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 NUBP1P53384 320 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 FHL1Q13642 323 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 GUSBP11Q6P575 273 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 KCNE4Q8WWG9 221 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 SNHG12Q9BXW3 62 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 KCNIP2Q9NS61 270 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 CLN8Q9UBY8 286 aa12.3□□□□□ -0.44
LIMS1-215ENST00000544547 ABCA7Q8IZY2 2146 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 KBTBD11O94819 623 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 SERF2P84101 59 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 DEFB109BQ30KR1 87 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 ZDHHC23Q8IYP9 409 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 SELENOHQ8IZQ5 122 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms