RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 PPP1CCP36873 323 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 OR3A3P47888 321 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 CX3CL1P78423 397 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 ZNF660Q6AZW8 331 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 RAB12Q6IQ22 244 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 TRAT1Q6PIZ9 186 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 SGPP2Q8IWX5 399 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 GPR148Q8TDV2 347 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 FLYWCH2Q96CP2 140 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 MYCBPQ99417 103 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 ZNF184Q99676 751 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 AMBNQ9NP70 447 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 MBNL3Q9NUK0 354 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 FAM53CQ9NYF3 392 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 STUB1Q9UNE7 303 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 A3GALT2U3KPV4 340 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 SAA2-SAA4A0A096LPE2 208 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 FCN1O00602 326 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 SAA2P0DJI9 122 aaPredicted RBP13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 ZIK1Q3SY52 487 aaPredicted RBP13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 TCTEX1D1Q8N7M0 179 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 OR52I1Q8NGK6 324 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 FBXL15Q9H469 300 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 SPACA1Q9HBV2 294 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 KIAA1456Q9P272 454 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 GAB2Q9UQC2 676 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 ERGIC3Q9Y282 383 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 GMPPBQ9Y5P6 360 aa13.63□□□□□ -0.23
CLSTN3-214ENST00000542663 FRAS1Q86XX4 4008 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 JTBO76095 146 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 FADS2O95864 444 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 LIMS3P0CW19 117 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 LIMS4P0CW20 117 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 SNRPBP14678 240 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 IGFBP3P17936 291 aaPredicted RBP13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 PPP3R1P63098 170 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 CD200R1LQ6Q8B3 271 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 RHOVQ96L33 236 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 MS4A10Q96PG2 267 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 FAM103A1Q9BTL3 118 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 RSRP1Q9BUV0 290 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 ELOVL1Q9BW60 279 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 JPT1Q9UK76 154 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 PEX16Q9Y5Y5 336 aa13.62□□□□□ -0.23
CLSTN3-214ENST00000542663 EI24O14681 340 aa13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 RRHO14718 337 aa13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 ARSBP15848 533 aa13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 RAB40BQ12829 278 aa13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 SIGIRRQ6IA17 410 aa13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 PYHIN1Q6K0P9 492 aa13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 RPL22L1Q6P5R6 122 aaKnown RBP13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 FAM131AQ6UXB0 335 aa13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 ANKRD13BQ86YJ7 626 aa13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 OR13C5Q8NGS8 318 aa13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 THAP7Q9BT49 309 aaPredicted RBP13.61□□□□□ -0.23
CLSTN3-214ENST00000542663 UBE2QL1A1L167 161 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 YPEL1O60688 119 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 CA11O75493 328 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 TPPP2P59282 170 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 HTD2P86397 168 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 RIPK1Q13546 671 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 GPR176Q14439 515 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 CCDC58Q4VC31 144 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 AKIRIN2Q53H80 203 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 ACTBL2Q562R1 376 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 LY6G6FQ5SQ64 297 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 C1orf146Q5VVC0 180 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 UNQ5815/PRO19632Q6UWF5 114 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 PPP1R27Q86WC6 154 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 MRPL30Q8TCC3 161 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 YPEL2Q96QA6 119 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 IFI27L2Q9H2X8 130 aa13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 MRPS18AQ9NVS2 196 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 CNOT2Q9NZN8 540 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-214ENST00000542663 TRAV8-7A0A075B6U6 113 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 ARPC1BO15143 372 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 MAS1P04201 325 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 IFNA6P05013 189 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 TMEM267Q0VDI3 215 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 GLIPR1L1Q6UWM5 242 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 IL34Q6ZMJ4 242 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 ZNF554Q86TJ5 538 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 LFNGQ8NES3 379 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 RHOXF1Q8NHV9 184 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 ABHD5Q8WTS1 349 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 MUL1Q969V5 352 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 MRPS24Q96EL2 167 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 BANF2Q9H503 90 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 RETNQ9HD89 108 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 ORC6Q9Y5N6 252 aa13.59□□□□□ -0.23
CLSTN3-214ENST00000542663 FAM90A7PA6NKC0 464 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 FAM90A23PA8MXZ1 464 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 GPX5O75715 221 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 CT45A6P0DMU7 189 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 CT45A5P0DMU8 189 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 CT45A7P0DMV0 189 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 OR2G6Q5TZ20 316 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 Q96M66 194 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 RDH12Q96NR8 316 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 SELENOIQ9C0D9 397 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms