RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 LHBP01229 141 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 NKX2-1P43699 371 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-216ENST00000541410 LY6DQ14210 128 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 NMSQ5H8A3 153 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 UTF1Q5T230 341 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 OR5D13Q8NGL4 314 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 ANGPTL6Q8NI99 470 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 NINJ1Q92982 152 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 VKORC1Q9BQB6 163 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 PFDN2Q9UHV9 154 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 TANC2Q9HCD6 1990 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 FAM24AA6NFZ4 105 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 TUBAL3A6NHL2 446 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 E5RGE8 158 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 ST8SIA5O15466 376 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 VDAC1P21796 283 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 P2RX3P56373 397 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 CDSNQ15517 529 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 Q6ZRM9 215 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 FAM90A1Q86YD7 464 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 LINC01560Q8TB33 94 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 SLC25A32Q9H2D1 315 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 NSG2Q9Y328 171 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 MFSD2BA6NFX1 497 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 CCL21O00585 134 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 SIGLEC5O15389 551 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 RAMP3O60896 148 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 SCO1O75880 301 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 GYPAP02724 150 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 CAV2P51636 162 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 THOC7Q6I9Y2 204 aaKnown RBP12.11□□□□□ -0.47
CLIP1-216ENST00000541410 NUP37Q8NFH4 326 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 OR10Z1Q8NGY1 313 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 STOML3Q8TAV4 291 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 GPR146Q96CH1 333 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 RBMXL1Q96E39 390 aaKnown RBP12.11□□□□□ -0.47
CLIP1-216ENST00000541410 RNF7Q9UBF6 113 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 PSG11Q9UQ72 335 aa12.11□□□□□ -0.47
CLIP1-216ENST00000541410 ODAMA1E959 279 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 RPL30P62888 115 aaKnown RBP12.1□□□□□ -0.47
CLIP1-216ENST00000541410 ZNF585BQ52M93 769 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 LEAP2Q969E1 77 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 CCL13Q99616 98 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 WFDC1Q9HC57 220 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 IL19Q9UHD0 177 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 POMT1Q9Y6A1 747 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 CFHR2P36980 270 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 AKR1C2P52895 323 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 KLRB1Q12918 225 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 FAM216BQ8N7L0 139 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 OR1S2Q8NGQ3 325 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 PHYHIPLQ96FC7 376 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 LINC00052Q96N35 136 aa12.1□□□□□ -0.47
CLIP1-216ENST00000541410 BARX1Q9HBU1 254 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-216ENST00000541410 H3BP45 60 aa12.09□□□□□ -0.47
CLIP1-216ENST00000541410 C15orf65H3BRN8 121 aa12.09□□□□□ -0.47
CLIP1-216ENST00000541410 TMEM50AO95807 157 aa12.09□□□□□ -0.47
CLIP1-216ENST00000541410 PLAUP00749 431 aa12.09□□□□□ -0.47
CLIP1-216ENST00000541410 ZNF816Q0VGE8 651 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-216ENST00000541410 SNX22Q96L94 193 aa12.09□□□□□ -0.47
CLIP1-216ENST00000541410 HCFC1P51610 2035 aa12.09□□□□□ -0.47
CLIP1-216ENST00000541410 K7N7A8 449 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 IGKV1-5P01602 117 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 TNFSF4P23510 183 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 TLE1Q04724 770 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 ZNF645Q8N7E2 425 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 PLEKHA2Q9HB19 425 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 GNG12Q9UBI6 72 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 CACNG5Q9UF02 275 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 RFNGQ9Y644 331 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 DCHS2Q6V1P9 2916 aa12.08□□□□□ -0.47
CLIP1-216ENST00000541410 A0A1W2PPE3 182 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 MGST3O14880 152 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 SPINT2O43291 252 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 GATA4P43694 442 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 CASP6P55212 293 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 AKR1C1Q04828 323 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 CLINT1Q14677 625 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 Q3ZCU0 254 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 TMEM217Q8N7C4 229 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 AKR1E2Q96JD6 320 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 LURAP1Q96LR2 239 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 SPIN2AQ99865 258 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 SPIN2BQ9BPZ2 258 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 FAM234AQ9H0X4 552 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 PLA2G2EQ9NZK7 142 aa12.08□□□□□ -0.48
CLIP1-216ENST00000541410 ANKHD1Q8IWZ3 2542 aaKnown RBP12.08□□□□□ -0.48
CLIP1-216ENST00000541410 IGSF23A1L1A6 192 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 C17orf100A8MU93 164 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 CHST1O43916 411 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 CST7O76096 145 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 CA7P43166 264 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 LPAR6P43657 344 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 PLEKHF2Q9H8W4 249 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 TAS2R3Q9NYW6 316 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 HIVEP3Q5T1R4 2406 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 ITPR1Q14643 2758 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 C17orf98A8MV24 154 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 ZNF705EA8MWA4 302 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-216ENST00000541410 SHISA9B4DS77 424 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms