RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 A0A0G2JLL6 359 aaPredicted RBP7.64□□□□□ -1.19
YBX3-208ENST00000540447 A0A1W2PNR3 127 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 TMEM189A5PLL7 270 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 NGFP01138 241 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 FOXA3P55318 350 aaPredicted RBP7.64□□□□□ -1.19
YBX3-208ENST00000540447 PRRT2Q7Z6L0 340 aaPredicted RBP7.64□□□□□ -1.19
YBX3-208ENST00000540447 CNEP1R1Q8N9A8 125 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 FER1L6-AS1Q8NA97 138 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 LRRC29Q8WV35 223 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 SPSB4Q96A44 273 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 EDA2RQ9HAV5 297 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 LOXHD1Q8IVV2 1947 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 SERTM1A2A2V5 107 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 PLPP3O14495 311 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 CXorf66Q5JRM2 361 aaPredicted RBP7.64□□□□□ -1.19
YBX3-208ENST00000540447 DGAT2L7PQ6IED9 249 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 RTN4RQ9BZR6 473 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 PPIL1Q9Y3C6 166 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 TRAV38-1A0A0B4J264 116 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 CD5P06127 495 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 TDGF1P13385 188 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 NOVP48745 357 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 ST8SIA1Q92185 356 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 TRBV24-1A0A075B6N3 115 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 A0A0A6YYD5 115 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 IGHV3-9P01782 118 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 MGPP08493 103 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 HBBP68871 147 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 DCDP81605 110 aaKnown RBP7.64□□□□□ -1.19
YBX3-208ENST00000540447 GGTLC2Q14390 218 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 MPV17L2Q567V2 206 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 GCSAMLQ5JQS6 135 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 PAXXQ9BUH6 204 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 C5orf66Q9H5L9 145 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 CA11O75493 328 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 EGR1P18146 543 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 TSPOP30536 169 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 FOXL2P58012 376 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 C9orf153Q5TBE3 101 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 C1QL3Q5VWW1 255 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 ADAMTSL5Q6ZMM2 481 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 AICDAQ9GZX7 198 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 CHD5Q8TDI0 1954 aa7.64□□□□□ -1.19
YBX3-208ENST00000540447 H0Y980 276 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 RPL23P62829 140 aaKnown RBP7.63□□□□□ -1.19
YBX3-208ENST00000540447 TSSC4Q9Y5U2 329 aaPredicted RBP7.63□□□□□ -1.19
YBX3-208ENST00000540447 ROBO1Q9Y6N7 1651 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 TRAV8-1A0A0A6YYK1 113 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 DEFB108AA8MXU0 73 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 MPDU1O75352 247 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 IGHV4-34P06331 123 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 C1orf174Q8IYL3 243 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 PLPPR2Q96GM1 343 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 KIR3DX1Q9H7L2 352 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 RNF122Q9H9V4 155 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 Q9Y3F1 56 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 CFIP05156 583 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 ARL14EPLP0DKL9 152 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 AZU1P20160 251 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 PRTN3P24158 256 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 NANOS3P60323 173 aaKnown RBP7.63□□□□□ -1.19
YBX3-208ENST00000540447 ICAM4Q14773 271 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 VMA21Q3ZAQ7 101 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 SFTA2Q6UW10 78 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 DHHO43323 396 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 TSPAN2O60636 221 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 ACP1P24666 158 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 BTCP35070 178 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 TMEM144Q7Z5S9 345 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 C16orf52Q8NHV5 167 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 GRAMD2BQ96HH9 432 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 PLA2G3Q9NZ20 509 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 F8VVB4 439 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 F8VWA3 439 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 HOXA3O43365 443 aaPredicted RBP7.63□□□□□ -1.19
YBX3-208ENST00000540447 CD5LO43866 347 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 DNAL4O96015 105 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 ELNP15502 786 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 FCGR2BP31994 310 aaPredicted RBP7.63□□□□□ -1.19
YBX3-208ENST00000540447 TMPRSS3P57727 454 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 TMEM177Q53S58 311 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 TMEM211Q6ICI0 200 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 TMEM40Q8WWA1 233 aa7.63□□□□□ -1.19
YBX3-208ENST00000540447 UBE2ZQ9H832 354 aaPredicted RBP7.63□□□□□ -1.19
YBX3-208ENST00000540447 MRPS17Q9Y2R5 130 aaKnown RBP7.63□□□□□ -1.19
YBX3-208ENST00000540447 TIAM2Q8IVF5 1701 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 NTN1O95631 604 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 INSM1Q01101 510 aaPredicted RBP7.62□□□□□ -1.19
YBX3-208ENST00000540447 SPRED2Q7Z698 418 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 TMEM222Q9H0R3 208 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 MS4A6AQ9H2W1 248 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 DYNLRB1Q9NP97 96 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 RPRMQ9NS64 109 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 TMEM242Q9NWH2 141 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 FER1L6Q2WGJ9 1857 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 MED1Q15648 1581 aaPredicted RBP7.62□□□□□ -1.19
YBX3-208ENST00000540447 CRYBB3P26998 211 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 HOXA4Q00056 320 aaPredicted RBP7.62□□□□□ -1.19
YBX3-208ENST00000540447 OR10J3Q5JRS4 329 aa7.62□□□□□ -1.19
YBX3-208ENST00000540447 TEX38Q6PEX7 206 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms