RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 Q9N2K0 584 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 IL19Q9UHD0 177 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 ICE1Q9Y2F5 2266 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 KALRNO60229 2985 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 C5orf51A6NDU8 294 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 M0R143 59 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 PHOX2AO14813 284 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 METTL15P1P0C7V9 234 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF728P0DKX0 622 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 GLI4P10075 376 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 PF4V1P10720 104 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 KITLGP21583 273 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 PTTG1IPP53801 180 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF154Q13106 437 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 ANKRD55Q3KP44 614 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF718Q3SXZ3 478 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 SGPP2Q8IWX5 399 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 PPP1R1CQ8WVI7 109 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 MOB3AQ96BX8 217 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 VPS25Q9BRG1 176 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 DNAJC4Q9NNZ3 241 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 TRAV24A0A0B4J272 114 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 C13orf42A0A1B0GVH6 325 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 CRYM-AS1A6NIL9 109 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 EEF1E1-BLOC1S5C9J1V9 151 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 H0YL77 283 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 TIMM8AO60220 97 aaPredicted RBP8.17□□□□□ -1.1
CLIP1-212ENST00000540304 PGA5P0DJD9 388 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 SLC25A4P12235 298 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 GCH1P30793 250 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 CDX1P47902 265 aaPredicted RBP8.17□□□□□ -1.1
CLIP1-212ENST00000540304 ERVK11-1P61568 191 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 MBNL2Q5VZF2 373 aaKnown RBP8.17□□□□□ -1.1
CLIP1-212ENST00000540304 LEMD1Q68G75 181 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 C11orf87Q6NUJ2 197 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 TMUB2Q71RG4 321 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 CISD2Q8N5K1 135 aaKnown RBP8.17□□□□□ -1.1
CLIP1-212ENST00000540304 Q8NA96 180 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 TOMM40LQ969M1 308 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 CLCC1Q96S66 551 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 NRIP2Q9BQI9 281 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 ELOVL1Q9BW60 279 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 NMES1Q9C002 83 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF430Q9H8G1 570 aaPredicted RBP8.17□□□□□ -1.1
CLIP1-212ENST00000540304 OR14J1Q9UGF5 321 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 KIR2DS1A0A191URI9 304 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 PRRG2O14669 202 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 CDIPTO14735 213 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 DEGS1O15121 323 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 MLNRO43193 412 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 KIR2DS4P43632 304 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 UCP3P55916 312 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 FXYD4P59646 89 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 HERV-K104P61576 105 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 CYCSP99999 105 aaKnown RBP8.17□□□□□ -1.1
CLIP1-212ENST00000540304 NAAAQ02083 359 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 KIR2DS1Q14954 304 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 ATXN7L3Q14CW9 347 aaPredicted RBP8.17□□□□□ -1.1
CLIP1-212ENST00000540304 C3orf36Q3SXR2 165 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 ABCA11PQ4W5N1 156 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF546Q86UE3 836 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 ZGRF1Q86YA3 2104 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 PIK3IP1Q96FE7 263 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 ARL6Q9H0F7 186 aa8.17□□□□□ -1.1
CLIP1-212ENST00000540304 TLN1Q9Y490 2541 aaKnown RBP8.17□□□□□ -1.1
CLIP1-212ENST00000540304 TRBV6-6A0A0A6YYG2 114 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 HS3ST1O14792 307 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 GRPP07492 148 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 FABP6P51161 128 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF83P51522 516 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 PIGPP57054 158 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 HOXA4Q00056 320 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-212ENST00000540304 TLE4Q04727 773 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 BEX5Q5H9J7 111 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 DNLZQ5SXM8 178 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 Q6P435 159 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF664Q8N3J9 261 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 C15orf54Q8N8G6 183 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 MRPL30Q8TCC3 161 aaKnown RBP8.16□□□□□ -1.1
CLIP1-212ENST00000540304 RDH5Q92781 318 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 MUCL1Q96DR8 90 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 NOL4LQ96MY1 436 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-212ENST00000540304 CXXC4Q9H2H0 198 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 C1orf123Q9NWV4 160 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 ATP23Q9Y6H3 246 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 KIAA2026Q5HYC2 2103 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 A6NLC8 198 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 TRDCB7Z8K6 153 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 ADAP1O75689 374 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 PPYP01298 95 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 AADACP22760 399 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 DOLPP1Q86YN1 238 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 POC1AQ8NBT0 407 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 PIGMQ9H3S5 423 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 METTL8Q9H825 291 aaKnown RBP8.16□□□□□ -1.1
CLIP1-212ENST00000540304 FZR1Q9UM11 496 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 TNFSF18Q9UNG2 199 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 CARHSP1Q9Y2V2 147 aaKnown RBP8.16□□□□□ -1.1
CLIP1-212ENST00000540304 hCG_1809904A0A1W2PP81 198 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 A0A1W2PR64 198 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms