RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 FAM231BA6NCW3 169 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 PRR32B1ATL7 298 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 H3BMH7 237 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 F2RL2O00254 374 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 SAP18O00422 153 aaKnown RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 SH2D1BO14796 132 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 MLNRO43193 412 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 XRCC2O43543 280 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 CLDN1O95832 211 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 CA2P00918 260 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 TTRP02766 147 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 PSG2P11465 335 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 FUT1P19526 365 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 RGRP47804 291 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 DNASE1L1P49184 302 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 ASCL1P50553 236 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 ZNF83P51522 516 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 ZNF136P52737 540 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 SMAD3P84022 425 aaKnown RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 EGR4Q05215 589 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 DMWDQ09019 674 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 ELAVL3Q14576 367 aaKnown RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 GABRA6Q16445 453 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 C5orf47Q569G3 176 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 WDR38Q5JTN6 314 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 MUC21Q5SSG8 566 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 LINC01590Q5TEZ4 76 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 CARD17Q5XLA6 110 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 PLCXD3Q63HM9 321 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 FCRL6Q6DN72 434 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 LCN15Q6UWW0 184 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 ZNF788Q6ZQV5 615 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 ERASQ7Z444 233 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 YRDCQ86U90 279 aaKnown RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 TUSC5Q8IXB3 177 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 SCCPDHQ8NBX0 429 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 OR51A4Q8NGJ6 313 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 TSSK2Q96PF2 358 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 FAM103A1Q9BTL3 118 aaKnown RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 COMMD5Q9GZQ3 224 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 GLIPR2Q9H4G4 154 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 C11orf1Q9H5F2 150 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 ZNF665Q9H7R5 613 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 UBE2ZQ9H832 354 aaPredicted RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 WDR76Q9H967 626 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 TAS2R4Q9NYW5 299 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 C1RLQ9NZP8 487 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 CD207Q9UJ71 328 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 HSPB8Q9UJY1 196 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 MCTS1Q9ULC4 181 aaKnown RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 UBE2J1Q9Y385 318 aaPredicted RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 MKI67P46013 3256 aaKnown RBP4.97□□□□□ -1.61
CD44-225ENST00000527326 DOCK4Q8N1I0 1966 aa4.96□□□□□ -1.61
CD44-225ENST00000527326 MDFIC2A0A1B0GVS7 189 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 A0A1B0GVT2 93 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 PGPEP1LA6NFU8 196 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 WIPF3A6NGB9 483 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 FBLL1A6NHQ2 334 aaKnown RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 KRTAP9-7A8MTY7 169 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 SIVA1O15304 175 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 ZNF737O75373 536 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 CNIH1O95406 144 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 IGHG4P01861 327 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 HMGN2P05204 90 aaKnown RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 DBIP07108 87 aaKnown RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 ADH4P08319 380 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 WNT2P09544 360 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 SMIM10L1P0DMW3 83 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 IGLL1P15814 213 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 HIST1H1DP16402 221 aaKnown RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 ZNF17P17021 662 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 PI3P19957 117 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 MDH2P40926 338 aaKnown RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 NCBP2P52298 156 aaKnown RBP eCLIP4.96□□□□□ -1.62
CD44-225ENST00000527326 RPL32P62910 135 aaKnown RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 RPL24P83731 157 aaKnown RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 SERF2P84101 59 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 RTP5Q14D33 572 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 TBR1Q16650 682 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 CLEC12BQ2HXU8 276 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 PRICKLE4Q2TBC4 344 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 ASCL4Q6XD76 172 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 MOB1BQ7L9L4 216 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 OLIG3Q7RTU3 272 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 PRRT2Q7Z6L0 340 aaPredicted RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 HMGN2P46Q86SG4 172 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 AMZ2Q86W34 360 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 LYPD6Q86Y78 171 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 TMEM252Q8N6L7 170 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 OR10AC1Q8NH08 325 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 OR10AG1Q8NH19 301 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 PPTC7Q8NI37 304 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 VSTM2AQ8TAG5 236 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 TMEM45BQ96B21 275 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 NEIL1Q96FI4 390 aaPredicted RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 SLC25A44Q96H78 314 aaPredicted RBP4.96□□□□□ -1.62
CD44-225ENST00000527326 SMIM10Q96HG1 83 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 GRAMD2BQ96HH9 432 aa4.96□□□□□ -1.62
CD44-225ENST00000527326 C18orf12Q96KH6 178 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms