RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 HCRTR1O43613 425 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 SLC25A17O43808 307 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 GPR137BO60478 399 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 CTSVO60911 334 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 TNFRSF6BO95407 300 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 SFT2D2O95562 160 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 PPP1R3DO95685 299 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 MT-CO2P00403 227 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 CD3DP04234 171 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ADH4P08319 380 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ESDP10768 282 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 PTNP21246 168 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 FBLP22087 321 aaKnown RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 EDNRAP25101 427 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 SLC6A6P31641 620 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 NPBWR2P48146 333 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ASCL1P50553 236 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 PGGT1BP53609 377 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ELLP55199 621 aaPredicted RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 SUMO3P55854 103 aaPredicted RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 LGALS4P56470 323 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 TRA2BP62995 288 aaKnown RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 TGM3Q08188 693 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 MFGE8Q08431 387 aaPredicted RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 ZNF154Q13106 437 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ZIC1Q15915 447 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 C2orf68Q2NKX9 166 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 PDLIM3Q53GG5 364 aaPredicted RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 ALG10Q5BKT4 473 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 LRRC10Q5BKY1 277 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 BEX5Q5H9J7 111 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 TCTEX1D4Q5JR98 221 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 CTSL3PQ5NE16 218 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 C12orf54Q6X4T0 127 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ZNF66Q6ZN08 573 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 FRRS1Q6ZNA5 592 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ZNF679Q8IYX0 411 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 OR2L13Q8N349 312 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 C17orf78Q8N4C9 275 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ZNF433Q8N7K0 673 aaPredicted RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 ZSCAN4Q8NAM6 433 aaPredicted RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 CYB561A3Q8NBI2 242 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ABHD5Q8WTS1 349 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 PTPMT1Q8WUK0 201 aaPredicted RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 SLC38A5Q8WUX1 472 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 TOMM40LQ969M1 308 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 DERL3Q96Q80 235 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 OR2V2Q96R30 315 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 TBX15Q96SF7 602 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 AGMATQ9BSE5 352 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ABHD6Q9BV23 337 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 TMEM106BQ9NUM4 274 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ZNF586Q9NXT0 402 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ALKBH4Q9NXW9 302 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ZNF230Q9UIE0 474 aaPredicted RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 PPP1R3CQ9UQK1 317 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 C14orf166Q9Y224 244 aaKnown RBP4.3□□□□□ -1.72
CD44-218ENST00000525469 WSB1Q9Y6I7 421 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 FREM1Q5H8C1 2179 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 PKD1L1Q8TDX9 2849 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 HEATR5BQ9P2D3 2071 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 TGP01266 2768 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 TRAV18A0A075B6X5 111 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 A0A087WUU8 490 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 TRBV9A0A0B4J1U6 114 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 C13orf42A0A1B0GVH6 325 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 MBD3L4A6NDZ8 208 aaPredicted RBP4.29□□□□□ -1.72
CD44-218ENST00000525469 A6NIN4 97 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 MBD3L5A6NJ08 208 aaPredicted RBP4.29□□□□□ -1.72
CD44-218ENST00000525469 GEMIN2O14893 280 aaKnown RBP4.29□□□□□ -1.72
CD44-218ENST00000525469 SMAD9O15198 467 aaKnown RBP4.29□□□□□ -1.72
CD44-218ENST00000525469 CCL25O15444 150 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 SOX15O60248 233 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 NME2P1O60361 137 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 OR7C2O60412 319 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 VENTXO95231 258 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 HLA-HP01893 362 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 STATHP02808 62 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 CRYGCP07315 174 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 SRP19P09132 144 aaKnown RBP4.29□□□□□ -1.72
CD44-218ENST00000525469 PIRTP0C851 137 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 PGA3P0DJD8 388 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 C8orf89P0DMQ9 161 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 MMP9P14780 707 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 LMO1P25800 156 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 FCGR2CP31995 323 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 CEACAM8P31997 349 aaPredicted RBP4.29□□□□□ -1.72
CD44-218ENST00000525469 GABRA3P34903 492 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 ACVR1BP36896 505 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 SLC6A8P48029 635 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 CYB561P49447 251 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 SRPXP78539 464 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 PAX2Q02962 417 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 MALLQ13021 153 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 ENDOGQ14249 297 aaKnown RBP4.29□□□□□ -1.72
CD44-218ENST00000525469 OR7A5Q15622 319 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 VAMP3Q15836 100 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 HIST3H3Q16695 136 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 PRTGQ2VWP7 1150 aa4.29□□□□□ -1.72
CD44-218ENST00000525469 PLPPR5Q32ZL2 321 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms