RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 HFEQ30201 348 aa11.96□□□□□ -0.5
SYNPO-205ENST00000522122 COX19Q49B96 90 aa11.96□□□□□ -0.5
SYNPO-205ENST00000522122 CYB561D1Q8N8Q1 229 aa11.96□□□□□ -0.5
SYNPO-205ENST00000522122 PLXNB3Q9ULL4 1909 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 TRIOBPQ9H2D6 2365 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 TMEM210A6NLX4 147 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 AESQ08117 197 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 PSG5Q15238 335 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 PITPNC1Q9UKF7 332 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 ZNF318Q5VUA4 2279 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 ORM2P19652 201 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 CAMPP49913 170 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 BHLHA15Q7RTS1 189 aaPredicted RBP11.95□□□□□ -0.5
SYNPO-205ENST00000522122 HSF4Q9ULV5 492 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 CACNA1EQ15878 2313 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 TRAV38-1A0A0B4J264 116 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 PDE6DO43924 150 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 ZNF253O75346 499 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 SP1P08047 785 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 BCL2P10415 239 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 B2MP61769 119 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 MOGAT3Q86VF5 341 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 MSL2Q9HCI7 577 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 FUT9Q9Y231 359 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 LOC390937A0A1W2PQ73 354 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 NCBP2LA6PVI3 153 aaKnown RBP11.95□□□□□ -0.5
SYNPO-205ENST00000522122 B4E171 279 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 SCTP09683 121 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 PGA5P0DJD9 388 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 TSPAN7P41732 249 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 VPS25Q9BRG1 176 aa11.95□□□□□ -0.5
SYNPO-205ENST00000522122 TMPRSS2O15393 492 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 TUBD1Q9UJT1 453 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 LRRC3CA6NJW4 275 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 H0Y980 276 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 EIF3GO75821 320 aaKnown RBP eCLIP11.94□□□□□ -0.5
SYNPO-205ENST00000522122 AGFG2O95081 481 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 MNX1P50219 401 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-205ENST00000522122 NSUN5P2Q63ZY6 315 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 ZNF785A8K8V0 405 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 F8VVB4 439 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 F8VWA3 439 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 PRRX1P54821 245 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 ZNF106Q9H2Y7 1883 aaKnown RBP11.94□□□□□ -0.5
SYNPO-205ENST00000522122 IGHV1-45A0A0A0MS14 117 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A10PA6NDY2 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A18PA6NE21 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A16PA6NEW6 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A20PA6NIJ5 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A8PA6NJQ4 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A7PA6NKC0 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 DHRS7CA6NNS2 312 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A22PA8MWA6 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A12PA8MX19 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A5PA8MXJ8 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A23PA8MXZ1 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FGF16O43320 207 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A15PP0C7V4 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A13PP0C7W8 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A14PP0C7W9 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 FAM90A24PP0C7X0 464 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 PPP1CCP36873 323 aaKnown RBP11.94□□□□□ -0.5
SYNPO-205ENST00000522122 CXorf66Q5JRM2 361 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-205ENST00000522122 GMPPAQ96IJ6 420 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-205ENST00000522122 TTTY12Q9BZ98 90 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 CLN8Q9UBY8 286 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 PRNDQ9UKY0 176 aa11.94□□□□□ -0.5
SYNPO-205ENST00000522122 C17orf51A8MQB3 221 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 NPY1RP25929 384 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 RNF7Q9UBF6 113 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 SYNGR1O43759 233 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 TCL1AP56279 114 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 RIPPLY2Q5TAB7 128 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 PMS2CLQ68D20 193 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 ABHD14BQ96IU4 210 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 ONECUT1Q9UBC0 465 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 ANAPC1Q9H1A4 1944 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 HOXA6P31267 233 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 FHL1Q13642 323 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 Q56UQ5 140 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 SPNS3Q6ZMD2 512 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 TIPARPQ7Z3E1 657 aaKnown RBP11.93□□□□□ -0.5
SYNPO-205ENST00000522122 FAM157CP0CG43 387 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 FGF5P12034 268 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 HTR1DP28221 377 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 GABRA6Q16445 453 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 SNAI3Q3KNW1 292 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 RSG1Q9BU20 258 aa11.93□□□□□ -0.5
SYNPO-205ENST00000522122 COX7A1P24310 79 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 PTTG1IPP53801 180 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 PDPNQ86YL7 162 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 NHLRC2Q8NBF2 726 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 PRSS3P2Q8NHM4 247 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 SMIM8Q96KF7 97 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 Q96M66 194 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 CHRNA10Q9GZZ6 450 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 CACNA1DQ01668 2161 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 TEPPQ6URK8 271 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 HS3ST3B1Q9Y662 390 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 TRAV34A0A0B4J273 112 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms