RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SNIP1Q8TAD8 396 aaKnown RBP13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 GNPNAT1Q96EK6 184 aaPredicted RBP13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 KIAA1456Q9P272 454 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RELNP78509 3460 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 BTBD17A6NE02 478 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CD81P60033 236 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 HLA-DRB3P79483 266 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 FAM58AQ8N1B3 248 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CABLES2Q9BTV7 478 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RHBDL1O75783 438 aa13.65□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 IL24Q13007 206 aa13.65□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ICAM4Q14773 271 aa13.65□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ATP5SQ99766 215 aa13.65□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 PRSS50Q9UI38 385 aa13.65□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ERRFI1Q9UJM3 462 aaPredicted RBP13.65□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 MPC1Q9Y5U8 109 aa13.65□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 LIPGQ9Y5X9 500 aa13.65□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ANKRD30BLA7E2S9 258 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 IGLV2-14P01704 120 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PSG2P11465 335 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ZNF14P17017 642 aaPredicted RBP13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 GNG3P63215 75 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ADAM5Q6NVV9 412 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 Q6P435 159 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 Q6ZRM9 215 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ZNF573Q86YE8 665 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR10J5Q8NHC4 309 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 RHOVQ96L33 236 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 HIPK2Q9H2X6 1198 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR51I2Q9H344 312 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR5B21A6NL26 309 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 H3BQ15 152 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 IGKV1-39P01597 117 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 IGKV1D-39P04432 117 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 WNT2P09544 360 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ATRXP46100 2492 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 TAS2R30P59541 319 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PLP2Q04941 152 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 IZUMO4Q1ZYL8 232 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ZNF506Q5JVG8 444 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ZNF383Q8NA42 475 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR51H1Q8NH63 302 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR51B6Q9H340 312 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR1A1Q9P1Q5 309 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MED12LQ86YW9 2145 aa13.64□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 A0A1B0GU03 582 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 SCAF4O95104 1147 aaKnown RBP13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 SLC25A6P12236 298 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 HIST1H1BP16401 226 aaKnown RBP13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CEACAM6P40199 344 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR8G1Q15617 311 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR2T2Q6IF00 324 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 LINC00696Q6ZRV3 163 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MUCL1Q96DR8 90 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MRPL37Q9BZE1 423 aaKnown RBP13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PKIBQ9C010 78 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PRDM13Q9H4Q3 707 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 NKX2-8O15522 239 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR2C1O95371 312 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 IL18BPO95998 194 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CA6P23280 308 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 DDTP30046 118 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 DCAF10Q5QP82 559 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 AKR1C8PQ5T2L2 129 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 HEPN1Q6WQI6 88 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CLDND2Q8NHS1 167 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 RAB39BQ96DA2 213 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 GP6Q9HCN6 339 aa13.63□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 TRAV39A0A0B4J263 110 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 NPIPB11E5RHQ5 1161 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 H3BP45 60 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 NQO2P16083 231 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 APLNRP35414 380 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR2B8PP59922 312 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PKIAP61925 76 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PYY3Q5JQD4 70 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR10V1Q8NGI7 309 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ZNF727A8MUV8 499 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 H0YL77 283 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 DEGS1O15121 323 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 HSPB1P04792 205 aaKnown RBP13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 SERPINE2P07093 398 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PLGLB1Q02325 96 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 TMEM267Q0VDI3 215 aaPredicted RBP13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 TESK1Q15569 626 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 DPPA3Q6W0C5 159 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 WDR86Q86TI4 376 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 C1QL4Q86Z23 238 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 OR1K1Q8NGR3 316 aa13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 BCL2L2Q92843 193 aaPredicted RBP13.62□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 C1QTNF9BB2RNN3 333 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 KLK10O43240 276 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MBP02144 154 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 C1QTNF9P0C862 333 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 S100GP29377 79 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 SPATA46Q5T0L3 261 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 THNSL2Q86YJ6 484 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 TGIF2LXQ8IUE1 241 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CYB561D1Q8N8Q1 229 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms