RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 KIR2DS4P43632 304 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 HES1Q14469 280 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 HMGN3Q15651 99 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 ZNF880Q6PDB4 577 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 LINC00311Q8N616 119 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 OR1L1Q8NH94 360 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 SLC25A38Q96DW6 304 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 CMTM3Q96MX0 182 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 ABCG5Q9H222 651 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 KCNK7Q9Y2U2 307 aa13.17□□□□□ -0.3
SF3A1-209ENST00000496189 SMIM31A0A1B0GVY4 71 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 CCDC160A6NGH7 325 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 LY6LH3BQJ8 138 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 M0QZK8 103 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 TXNL1O43396 289 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 CHST1O43916 411 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 LOXL3P58215 753 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 GNG2P59768 71 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 HTD2P86397 168 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 PNLIPRP3Q17RR3 467 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 HACD4Q5VWC8 232 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 STEAP3Q658P3 488 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 OR10V1Q8NGI7 309 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 IL1F10Q8WWZ1 152 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 HDHD3Q9BSH5 251 aaPredicted RBP13.16□□□□□ -0.3
SF3A1-209ENST00000496189 Q9N2K0 584 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 COMMD3Q9UBI1 195 aa13.16□□□□□ -0.3
SF3A1-209ENST00000496189 TRAV18A0A075B6X5 111 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 TIMM23O14925 209 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 OR2F2O95006 317 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 APOA1P02647 267 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 HLA-DRB3P79483 266 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 KIR2DS1Q14954 304 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 SLC25A48Q6ZT89 311 aaKnown RBP13.15□□□□□ -0.3
SF3A1-209ENST00000496189 MOB3BQ86TA1 216 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 OR2AK2Q8NG84 335 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 ISOC1Q96CN7 298 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 SLC25A33Q9BSK2 321 aa13.15□□□□□ -0.3
SF3A1-209ENST00000496189 TENM1Q9UKZ4 2725 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 TRDCB7Z8K6 153 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 HSPA12AO43301 675 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 XRCC3O43542 346 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 DTYMKP23919 212 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 CD24P25063 80 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 PROK1P58294 105 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 ZNF816Q0VGE8 651 aaPredicted RBP13.14□□□□□ -0.31
SF3A1-209ENST00000496189 SPCS2Q15005 226 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 SRSF7Q16629 238 aaKnown RBP eCLIP13.14□□□□□ -0.31
SF3A1-209ENST00000496189 UTF1Q5T230 341 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 CCBE1Q6UXH8 406 aaPredicted RBP13.14□□□□□ -0.31
SF3A1-209ENST00000496189 THNSL2Q86YJ6 484 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 TGIF2LXQ8IUE1 241 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 OR56B4Q8NH76 319 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 CYYR1Q96J86 154 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 ABHD14AQ9BUJ0 271 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 CEPT1Q9Y6K0 416 aa13.14□□□□□ -0.31
SF3A1-209ENST00000496189 TMEM235A6NFC5 223 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 H3BMQ9 156 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 M0QZ24 198 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 YPEL1O60688 119 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 SNRNP70P08621 437 aaKnown RBP13.13□□□□□ -0.31
SF3A1-209ENST00000496189 FCGR3AP08637 254 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 TMEM11P17152 192 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 ZBTB25P24278 435 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 ZNF260Q3ZCT1 412 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 MORN2Q502X0 79 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 LY6G6FQ5SQ64 297 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 TMEM69Q5SWH9 247 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 LYG1Q8N1E2 194 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 DRAM1Q8N682 238 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 OR52L2PQ8NGH6 319 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 OR4A4PQ8NGN8 299 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 RBM14Q96PK6 669 aaKnown RBP13.13□□□□□ -0.31
SF3A1-209ENST00000496189 YPEL2Q96QA6 119 aa13.13□□□□□ -0.31
SF3A1-209ENST00000496189 IGHV1-3A0A0C4DH29 117 aa13.12□□□□□ -0.31
SF3A1-209ENST00000496189 A0A1W2PPI3 338 aa13.12□□□□□ -0.31
SF3A1-209ENST00000496189 PPP1CCP36873 323 aaKnown RBP13.12□□□□□ -0.31
SF3A1-209ENST00000496189 VDAC2P45880 294 aaPredicted RBP13.12□□□□□ -0.31
SF3A1-209ENST00000496189 REG1BP48304 166 aa13.12□□□□□ -0.31
SF3A1-209ENST00000496189 RTN4IP1Q8WWV3 396 aaPredicted RBP13.12□□□□□ -0.31
SF3A1-209ENST00000496189 EDARADDQ8WWZ3 215 aa13.12□□□□□ -0.31
SF3A1-209ENST00000496189 CITED1Q99966 193 aa13.12□□□□□ -0.31
SF3A1-209ENST00000496189 AUNIPQ9H7T9 357 aa13.12□□□□□ -0.31
SF3A1-209ENST00000496189 CCDC59Q9P031 241 aaKnown RBP13.12□□□□□ -0.31
SF3A1-209ENST00000496189 ADAM30Q9UKF2 790 aa13.12□□□□□ -0.31
SF3A1-209ENST00000496189 MOB4Q9Y3A3 225 aa13.12□□□□□ -0.31
SF3A1-209ENST00000496189 FAM25AB3EWG3 89 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 FAM25CB3EWG5 89 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 FAM25GB3EWG6 89 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 ZNF701M0R085 212 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-209ENST00000496189 FABP7O15540 132 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 DIRAS3O95661 229 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 IGKV1D-33P01593 117 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 IGKV1-33P01594 117 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 VSIG10L2P0DP72 767 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 CBX5P45973 191 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 CT45A1Q5HYN5 189 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 Q6ZS49 121 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 IZUMO1Q8IYV9 350 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 KLHDC1Q8N7A1 406 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms