RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NUFIP2Q7Z417 695 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 H1FOOQ8IZA3 346 aaPredicted RBP14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 CCL28Q9NRJ3 127 aa14.11□□□□□ -0.15
CCDC88B-209ENST00000494080 C3orf80F5H4A9 247 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 ISG15P05161 165 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 BCL3P20749 454 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 CNN1P51911 297 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 CXorf66Q5JRM2 361 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 SLC23A3Q6PIS1 610 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 CIB3Q96Q77 187 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 IGHV3-43A0A0B4J1X8 118 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 TRDCB7Z8K6 153 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 K7ESF4 209 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 IGHV3-43DP0DP04 118 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 MDH2P40926 338 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 Q8IYB0 196 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 MPC1Q9Y5U8 109 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 ANAPC1Q9H1A4 1944 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 LOC101059948A0A1B0GTJ6 334 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 OR7C2O60412 319 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 FAM3BP58499 235 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 TCTEX1D1Q8N7M0 179 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 ANAPC16Q96DE5 110 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 ZNF488Q96MN9 340 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 FAM206AQ9NX38 181 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 LYPD3O95274 346 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 RFPL3SP0C7P2 107 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 TMEM50BP56557 158 aa14.1□□□□□ -0.15
CCDC88B-209ENST00000494080 SIAH2O43255 324 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 PAGE4O60829 102 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 THBS3P49746 956 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 TEX30Q5JUR7 227 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 FBXW9Q5XUX1 488 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 PPP1R32Q7Z5V6 425 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 OR5AU1Q8NGC0 362 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 SRXN1Q9BYN0 137 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 G6PC2Q9NQR9 355 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 DOCK7Q96N67 2140 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 CRYM-AS1A6NIL9 109 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 OR3A1P47881 315 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 CDC34P49427 236 aaPredicted RBP14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 SLC24A4Q8NFF2 622 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 OR5B3Q8NH48 314 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 EDARADDQ8WWZ3 215 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 C10orf35Q96D05 121 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 GPR27Q9NS67 375 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 BET1LQ9NYM9 111 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 CHCHD2Q9Y6H1 151 aaPredicted RBP14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 C11orf94C9JXX5 98 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 ZNF735P0CB33 412 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 Q8WTZ3 238 aa14.09□□□□□ -0.15
CCDC88B-209ENST00000494080 TMEM14DPA8MWL7 114 aa14.08□□□□□ -0.15
CCDC88B-209ENST00000494080 HLA-GP17693 338 aa14.08□□□□□ -0.15
CCDC88B-209ENST00000494080 SNAI3Q3KNW1 292 aa14.08□□□□□ -0.15
CCDC88B-209ENST00000494080 MRGPRDQ8TDS7 321 aa14.08□□□□□ -0.15
CCDC88B-209ENST00000494080 LRRC29Q8WV35 223 aa14.08□□□□□ -0.15
CCDC88B-209ENST00000494080 STARD4Q96DR4 205 aa14.08□□□□□ -0.15
CCDC88B-209ENST00000494080 NAGKQ9UJ70 344 aa14.08□□□□□ -0.15
CCDC88B-209ENST00000494080 DHRS7CA6NNS2 312 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 COL5A1-AS1Q5SY13 56 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 STPG1Q5TH74 334 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 MDP1Q86V88 176 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 DMRTA2Q96SC8 542 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 SPOCK3Q9BQ16 436 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 A0A0U1RQV5 110 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 MELTFP08582 738 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 SPNS3Q6ZMD2 512 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 C11orf42Q8N5U0 333 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 KLHDC3Q9BQ90 382 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 ZNF552Q9H707 407 aaPredicted RBP14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 CADP27708 2225 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 PCNX1Q96RV3 2341 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 GPHA2Q96T91 129 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 S1PR3Q99500 378 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 FOXJ2Q9P0K8 574 aa14.08□□□□□ -0.16
CCDC88B-209ENST00000494080 FCGR3AP08637 254 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 FTH1P19P0C7X4 201 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 FOLR2P14207 255 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 BOD1Q96IK1 185 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 OR2J1Q9GZK6 312 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 PSG11Q9UQ72 335 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 THADAQ6YHU6 1953 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 M0R1X1 148 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 GYPAP02724 150 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 DMRTA1Q5VZB9 504 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 LRRC75AQ8NAA5 344 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 OR1K1Q8NGR3 316 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 VOPP1Q96AW1 172 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 HES1Q14469 280 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 SPINK9Q5DT21 86 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 ZNF253O75346 499 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 TOX4O94842 621 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 OR10G8Q8NGN5 311 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 SLC25A40Q8TBP6 338 aa14.07□□□□□ -0.16
CCDC88B-209ENST00000494080 TMEM11P17152 192 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 AGAP20933 346 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 PRR27Q6MZM9 219 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 OR10X1Q8NGY0 326 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 SUCLG1P53597 346 aaKnown RBP14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 PYY3Q5JQD4 70 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms