RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ZNF645Q8N7E2 425 aa9□□□□□ -0.97
USP4-214ENST00000491791 Q8TCH9 128 aa9□□□□□ -0.97
USP4-214ENST00000491791 GALMQ96C23 342 aa9□□□□□ -0.97
USP4-214ENST00000491791 RAB40CQ96S21 281 aa9□□□□□ -0.97
USP4-214ENST00000491791 TSNAXQ99598 290 aaKnown RBP9□□□□□ -0.97
USP4-214ENST00000491791 WFDC1Q9HC57 220 aa9□□□□□ -0.97
USP4-214ENST00000491791 OR1A1Q9P1Q5 309 aa9□□□□□ -0.97
USP4-214ENST00000491791 GTF3C1Q12789 2109 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 INTS1Q8N201 2190 aaKnown RBP8.99□□□□□ -0.97
USP4-214ENST00000491791 PRRG2O14669 202 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 WNT9BO14905 357 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 ADAM20O43506 726 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 IGKV1-39P01597 117 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 IGKV1D-39P04432 117 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 SERPINE2P07093 398 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 DANCRP0C864 163 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 P0C879 139 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 GZMHP20718 246 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 PRDX2P32119 198 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 CEACAM6P40199 344 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 CAV2P51636 162 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 KLF3P57682 345 aaPredicted RBP8.99□□□□□ -0.97
USP4-214ENST00000491791 TAS2R30P59541 319 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 EWSR1Q01844 656 aaKnown RBP eCLIP8.99□□□□□ -0.97
USP4-214ENST00000491791 COL10A1Q03692 680 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 ZNF585BQ52M93 769 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 PRAMEF6Q5VXH4 476 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 ZNF826PQ6ZT77 177 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 FAM219AQ8IW50 185 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 SPAG16Q8N0X2 631 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 RPRMLQ8N4K4 120 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 DRAM1Q8N682 238 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 Q8NA96 180 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 PPP1R35Q8TAP8 253 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 LRRC29Q8WV35 223 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 GPR146Q96CH1 333 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 MEGF10Q96KG7 1140 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 SNX22Q96L94 193 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 MSL2Q9HCI7 577 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 ZC4H2Q9NQZ6 224 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 PLA2G2EQ9NZK7 142 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 GAB2Q9UQC2 676 aa8.99□□□□□ -0.97
USP4-214ENST00000491791 STRAPQ9Y3F4 350 aaKnown RBP8.99□□□□□ -0.97
USP4-214ENST00000491791 NBPF19A0A087WUL8 3843 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 TMEM218A2RU14 115 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 ZSCAN5BA6NJL1 495 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 ZNF705EA8MWA4 302 aaPredicted RBP8.98□□□□□ -0.97
USP4-214ENST00000491791 C15orf65H3BRN8 121 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 TRIM77I1YAP6 450 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 LGALS8O00214 317 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 MGST3O14880 152 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 HSPA12AO43301 675 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 HBZP02008 142 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 PSG2P11465 335 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 ZNF83P51522 516 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 ARHGDIBP52566 201 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 F2RL1P55085 397 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 PAX9P55771 341 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 ZNF266Q14584 549 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 CXorf66Q5JRM2 361 aaPredicted RBP8.98□□□□□ -0.97
USP4-214ENST00000491791 FOXRED2Q8IWF2 684 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 ODF3L1Q8IXM7 274 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 TMEM252Q8N6L7 170 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 CD177Q8N6Q3 437 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 IL1F10Q8WWZ1 152 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 OR2S2Q9NQN1 319 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 ASF1BQ9NVP2 202 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 IL19Q9UHD0 177 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 CARHSP1Q9Y2V2 147 aaKnown RBP8.98□□□□□ -0.97
USP4-214ENST00000491791 MMP24Q9Y5R2 645 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 WSB1Q9Y6I7 421 aa8.98□□□□□ -0.97
USP4-214ENST00000491791 SPENQ96T58 3664 aaKnown RBP8.98□□□□□ -0.97
USP4-214ENST00000491791 IGKV1D-17A0A075B6S4 117 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 A0A0G2JNJ9 132 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 A0A1B0GW64 132 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 A6NLC8 198 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 UMAD1C9J7I0 102 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 C3orf80F5H4A9 247 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 M0R1B8 84 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 F2RL2O00254 374 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 ATG12O94817 140 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 TMEM50AO95807 157 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 SCGB1D2O95969 90 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 CD5P06127 495 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 CD55P08174 381 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 CGB3P0DN86 165 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 CGB7P0DN87 165 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 PTAFRP25105 342 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 CD40P25942 277 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 POLR2GP62487 172 aaKnown RBP eCLIP8.97□□□□□ -0.97
USP4-214ENST00000491791 AESQ08117 197 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 TMEM30BQ3MIR4 351 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 PXDC1Q5TGL8 231 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 SP5Q6BEB4 398 aaPredicted RBP8.97□□□□□ -0.97
USP4-214ENST00000491791 ZNF66Q6ZN08 573 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 GCSAMQ8N6F7 178 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 BPIFCQ8NFQ6 507 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 OR2Z1Q8NG97 314 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 SUN5Q8TC36 379 aa8.97□□□□□ -0.97
USP4-214ENST00000491791 BSCL2Q96G97 398 aaPredicted RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms