RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PLPPR5Q32ZL2 321 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 ASPHD2Q6ICH7 369 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 KDF1Q8NAX2 398 aaPredicted RBP11.67□□□□□ -0.54
USP42-206ENST00000479544 RCC1LQ96I51 464 aaKnown RBP11.67□□□□□ -0.54
USP42-206ENST00000479544 Q96M66 194 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 PI4KAP42356 2102 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 TRAV38-1A0A0B4J264 116 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 LAMTOR5O43504 91 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 CBR3O75828 277 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 DEFA4P12838 97 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 P2RY6Q15077 328 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 PPP1R35Q8TAP8 253 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 TECTBQ96PL2 329 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 IMMP2LQ96T52 175 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 PARLQ9H300 379 aa11.67□□□□□ -0.54
USP42-206ENST00000479544 TECRQ9NZ01 308 aaKnown RBP11.67□□□□□ -0.54
USP42-206ENST00000479544 FOXD3Q9UJU5 478 aaPredicted RBP11.67□□□□□ -0.54
USP42-206ENST00000479544 M0R1X1 148 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 TFPI2P48307 235 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 RBM11P57052 281 aaKnown RBP11.66□□□□□ -0.54
USP42-206ENST00000479544 CTAG1AP78358 180 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 TMPRSS7Q7RTY8 843 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 MOB3AQ96BX8 217 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 GALNT14Q96FL9 552 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 SMDT1Q9H4I9 107 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 ARL3P36405 182 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 SELENOVP59797 346 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 ACY3Q96HD9 319 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 CDIPTO14735 213 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 GFRA3O60609 400 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 HRASP01112 189 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 S100A7P31151 101 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 GNG3P63215 75 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 CCL7P80098 99 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 LURAP1LQ8IV03 231 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 KLHDC1Q8N7A1 406 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 RTL8AQ9BWD3 113 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 ZNF552Q9H707 407 aaPredicted RBP11.66□□□□□ -0.54
USP42-206ENST00000479544 TUBA4BQ9H853 241 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 ALPK3Q96L96 1907 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 A0A0J9YW62 118 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 DIRC3C9JPN6 131 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 TMEM211Q6ICI0 200 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 FAM166AQ6J272 317 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 TMEM183AQ8IXX5 376 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 SELENOHQ8IZQ5 122 aaKnown RBP11.66□□□□□ -0.54
USP42-206ENST00000479544 RBMXL3Q8N7X1 1067 aaKnown RBP11.66□□□□□ -0.54
USP42-206ENST00000479544 OR10S1Q8NGN2 331 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 RAB24Q969Q5 203 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 OR2W1Q9Y3N9 320 aa11.66□□□□□ -0.54
USP42-206ENST00000479544 DSCR4P56555 118 aaPredicted RBP11.65□□□□□ -0.54
USP42-206ENST00000479544 C3AR1Q16581 482 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 Q56UQ5 140 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 RABEPKQ7Z6M1 372 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 HIST3H2BBQ8N257 126 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 RHBDD1Q8TEB9 315 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 MARS2Q96GW9 593 aaKnown RBP11.65□□□□□ -0.54
USP42-206ENST00000479544 TMEM147Q9BVK8 224 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 RIMS4Q9H426 269 aaPredicted RBP11.65□□□□□ -0.54
USP42-206ENST00000479544 ACACAQ13085 2346 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 CBLN1P23435 193 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 RANP62826 216 aaKnown RBP11.65□□□□□ -0.54
USP42-206ENST00000479544 ICAM4Q14773 271 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 SLC24A4Q8NFF2 622 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 OR2V1Q8NHB1 315 aa11.65□□□□□ -0.54
USP42-206ENST00000479544 MSI2Q96DH6 328 aaKnown RBP11.65□□□□□ -0.54
USP42-206ENST00000479544 C3orf80F5H4A9 247 aa11.65□□□□□ -0.55
USP42-206ENST00000479544 CSN3P07498 182 aa11.65□□□□□ -0.55
USP42-206ENST00000479544 FKBP2P26885 142 aaKnown RBP11.65□□□□□ -0.55
USP42-206ENST00000479544 OR2M3Q8NG83 312 aa11.65□□□□□ -0.55
USP42-206ENST00000479544 OR1L6Q8NGR2 347 aa11.65□□□□□ -0.55
USP42-206ENST00000479544 ZNF524Q96C55 264 aa11.65□□□□□ -0.55
USP42-206ENST00000479544 STRADBQ9C0K7 418 aa11.65□□□□□ -0.55
USP42-206ENST00000479544 PGPEP1LA6NFU8 196 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 SYNGR1O43759 233 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 ENSAO43768 121 aaKnown RBP11.64□□□□□ -0.55
USP42-206ENST00000479544 IGKV3-11P04433 115 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 TMEM11P17152 192 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 HOXA6P31267 233 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 OTX1P32242 354 aaPredicted RBP11.64□□□□□ -0.55
USP42-206ENST00000479544 PSG4Q00888 419 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 HLA-DRB5Q30154 266 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 APOBEC3DQ96AK3 386 aaPredicted RBP11.64□□□□□ -0.55
USP42-206ENST00000479544 TRBV6-7A0A0A0MS04 114 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 IGHV1OR15-9A0A0B4J2B8 117 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 GCGP01275 180 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 NUBP1P53384 320 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 SLC25A47Q6Q0C1 308 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 TAF15Q92804 592 aaKnown RBP eCLIP11.64□□□□□ -0.55
USP42-206ENST00000479544 FAM173AQ9BQD7 235 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 IL36RNQ9UBH0 155 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 CTXND1A0A1B0GTU2 59 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 A6NCN8 305 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 PGLYRP1O75594 196 aaPredicted RBP11.64□□□□□ -0.55
USP42-206ENST00000479544 OR4P4Q8NGL7 312 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 POLDIP2Q9Y2S7 368 aa11.64□□□□□ -0.55
USP42-206ENST00000479544 PROB1E7EW31 1015 aa11.63□□□□□ -0.55
USP42-206ENST00000479544 GNG4P50150 75 aa11.63□□□□□ -0.55
USP42-206ENST00000479544 UBE2G1P62253 170 aa11.63□□□□□ -0.55
USP42-206ENST00000479544 ZP4Q12836 540 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms