RNA–Protein interactions for RNA: ENST00000472223.5

CCM2-205, Transcript of CCM2 scaffold protein, human

TSL 3

Gene CCM2, Length 981 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-205	ENST00000472223	MS4A7	Q9GZW8	240 aa	Predicted RBP	13.77	□□□□□ -0.21
CCM2-205	ENST00000472223	OR1A1	Q9P1Q5	309 aa		13.77	□□□□□ -0.21
CCM2-205	ENST00000472223	NUP50	Q9UKX7	468 aa		13.77	□□□□□ -0.21
CCM2-205	ENST00000472223	CENPVL3	A0A0U1RRI6	287 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	RNASEK-C17orf49	H0YIS7	233 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	IGHV3-7	P01780	117 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	HTR1D	P28221	377 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	FCGR2C	P31995	323 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	KRTAP1-1	Q07627	177 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	KLRD1	Q13241	179 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	GNMT	Q14749	295 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	HERPUD1	Q15011	391 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	MIDN	Q504T8	468 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	VAX1	Q5SQQ9	334 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	OVCH2	Q7RTZ1	564 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	C5orf24	Q7Z6I8	188 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	BEND2	Q8NDZ0	799 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	LEAP2	Q969E1	77 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	ABHD14A	Q9BUJ0	271 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	MCUB	Q9NWR8	336 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	ZNF221	Q9UK13	617 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	FAM96B	Q9Y3D0	163 aa		13.76	□□□□□ -0.21
CCM2-205	ENST00000472223	IGKV1-6	A0A0C4DH72	117 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223		A0A1W2PRD5	423 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223		A0A1W2PRF3	423 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223		A0A1W2PRM7	423 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	LEUTX	A8MZ59	168 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223		M0QYG6	137 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	ITGB1BP1	O14713	200 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	NPFF	O15130	113 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	AMY2A	P04746	511 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	IL7	P13232	177 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	EPHA1	P21709	976 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	NFYA	P23511	347 aa	Predicted RBP	13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	LUM	P51884	338 aa	Predicted RBP	13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	ARHGDIB	P52566	201 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	DLX1	P56177	255 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	PRB3	Q04118	309 aa	Predicted RBP	13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	BAK1	Q16611	211 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	H1FOO	Q8IZA3	346 aa	Predicted RBP	13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	ARRDC1	Q8N5I2	433 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	GIMAP1	Q8WWP7	306 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	BORCS5	Q969J3	196 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	MMP28	Q9H239	520 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	ABCB10	Q9NRK6	738 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	PIPOX	Q9P0Z9	390 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	SCP2D1	Q9UJQ7	156 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	CDC42EP3	Q9UKI2	254 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	OR2W1	Q9Y3N9	320 aa		13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	TBL2	Q9Y4P3	447 aa	Known RBP	13.75	□□□□□ -0.21
CCM2-205	ENST00000472223	IGHV3OR16-10	A0A075B7F0	116 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	LANCL1	O43813	399 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	SLC22A5	O76082	557 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	AVP	P01185	164 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	CD74	P04233	296 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	SCGB2B2	Q4G0G5	96 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	MINOS1	Q5TGZ0	78 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	ZNF626	Q68DY1	528 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	LPCAT3	Q6P1A2	487 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	C16orf87	Q6PH81	154 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	DHRS11	Q6UWP2	260 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	SLC25A48	Q6ZT89	311 aa	Known RBP	13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	LYG1	Q8N1E2	194 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	LINC00311	Q8N616	119 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	TRIM63	Q969Q1	353 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	S1PR3	Q99500	378 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	PRRT1	Q99946	306 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	ZNF2	Q9BSG1	426 aa	Predicted RBP	13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	TOLLIP	Q9H0E2	274 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	MINOS1-NBL1	R4GNA1	71 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	ACAN	P16112	2415 aa		13.74	□□□□□ -0.21
CCM2-205	ENST00000472223	CELSR1	Q9NYQ6	3014 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	CSPG4	Q6UVK1	2322 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223		A0A1W2PPE3	182 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	NAP1L6	A6NFF2	107 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	BUB1B-PAK6	H3BSN5	160 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	RAB29	O14966	203 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	PPY	P01298	95 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	OR8U9	P0C7N5	309 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	IGHV4-38-2	P0DP08	117 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	S100G	P29377	79 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	ECI1	P42126	302 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	GPR12	P47775	334 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	HLA-DRB5	Q30154	266 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	CT45A1	Q5HYN5	189 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	OR8U1	Q8NH10	309 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	CT45A3	Q8NHU0	189 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	RPE	Q96AT9	228 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	C7orf50	Q9BRJ6	194 aa	Known RBP	13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	TINAGL1	Q9GZM7	467 aa	Predicted RBP	13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	C11orf54	Q9H0W9	315 aa	Predicted RBP	13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	DPM3	Q9P2X0	92 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	ZAN	Q9Y493	2812 aa		13.73	□□□□□ -0.21
CCM2-205	ENST00000472223	LINC00854	A0A1B0GVQ3	168 aa		13.72	□□□□□ -0.21
CCM2-205	ENST00000472223		J3QRK9	145 aa		13.72	□□□□□ -0.21
CCM2-205	ENST00000472223	ST8SIA5	O15466	376 aa		13.72	□□□□□ -0.21
CCM2-205	ENST00000472223	IGLV1-47	P01700	117 aa		13.72	□□□□□ -0.21
CCM2-205	ENST00000472223	AADAC	P22760	399 aa		13.72	□□□□□ -0.21
CCM2-205	ENST00000472223	FXYD4	P59646	89 aa		13.72	□□□□□ -0.21
CCM2-205	ENST00000472223	DEFA1	P59665	94 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms