RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 CAPSLQ8WWF8 208 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 NEU4Q8WWR8 484 aaPredicted RBP9.77□□□□□ -0.85
USP54-209ENST00000464635 BEX2Q9BXY8 128 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 FAM212BQ9NTI7 297 aaPredicted RBP9.77□□□□□ -0.85
USP54-209ENST00000464635 LPAR3Q9UBY5 353 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 OR14J1Q9UGF5 321 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 KCNS2Q9ULS6 477 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 GAB2Q9UQC2 676 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 FBN3Q75N90 2809 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 STAB1Q9NY15 2570 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 PPIAL4EA0A075B759 164 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 IGKV1-6A0A0C4DH72 117 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 DUXBA0A1W2PPF3 345 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 FAM172BPA6NC97 362 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 HMSDA8MTL9 139 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 PPIAL4DF5H284 164 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 GPR31O00270 319 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 GPR37O15354 613 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 PPIAL4FP0DN26 164 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 CGB3P0DN86 165 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 CGB7P0DN87 165 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 AKR1C4P17516 323 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 RCC1P18754 421 aaPredicted RBP9.76□□□□□ -0.85
USP54-209ENST00000464635 GNRHRP30968 328 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 MEF2CQ06413 473 aaPredicted RBP9.76□□□□□ -0.85
USP54-209ENST00000464635 Q3ZCU0 254 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 KRBOX4Q5JUW0 171 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 FAM120AOSQ5T036 256 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 CMTM1Q8IZ96 169 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 BATF2Q8N1L9 274 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 TCTEX1D1Q8N7M0 179 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 ADAD2Q8NCV1 583 aaKnown RBP9.76□□□□□ -0.85
USP54-209ENST00000464635 BVESQ8NE79 360 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 COQ2Q96H96 371 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 NMES1Q9C002 83 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 FXYD6Q9H0Q3 95 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 BEX1Q9HBH7 125 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 TAF9BQ9HBM6 251 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 TMEM106BQ9NUM4 274 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 PIPOXQ9P0Z9 390 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 PPIAL4AQ9Y536 164 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 MAB21L2Q9Y586 359 aa9.76□□□□□ -0.85
USP54-209ENST00000464635 DSCAML1Q8TD84 2053 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 F2RL2O00254 374 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 SPINT2O43291 252 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 TGFAP01135 160 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 AADACP22760 399 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 P2RX3P56373 397 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 PIGPP57054 158 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 GMFBP60983 142 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 CCL8P80075 99 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 KRTAP24-1Q3LI83 254 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 ABCA11PQ4W5N1 156 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 SPRNQ5BIV9 151 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 OR52B4Q8NGK2 314 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 OR52M1Q8NGK5 317 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 RTN4IP1Q8WWV3 396 aaPredicted RBP9.75□□□□□ -0.85
USP54-209ENST00000464635 IL22RA2Q969J5 263 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 CYYR1Q96J86 154 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 NAA60Q9H7X0 242 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 SLC2A9Q9NRM0 540 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 TAS2R3Q9NYW6 316 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 KIF25Q9UIL4 384 aa9.75□□□□□ -0.85
USP54-209ENST00000464635 IGHV1-69-2A0A0G2JMI3 117 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 TEX13DA0A0J9YY54 714 aaPredicted RBP9.74□□□□□ -0.85
USP54-209ENST00000464635 ODAMA1E959 279 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 NKX6-3A6NJ46 265 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 C15orf65H3BRN8 121 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 HSPB6O14558 160 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 MPPED1O15442 326 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 YPEL1O60688 119 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 SRD5A1P18405 259 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 C4BPBP20851 252 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 NFYAP23511 347 aaPredicted RBP9.74□□□□□ -0.85
USP54-209ENST00000464635 COL8A2P25067 703 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 RBMXP38159 391 aaKnown RBP9.74□□□□□ -0.85
USP54-209ENST00000464635 GABRA2P47869 451 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 LUMP51884 338 aaPredicted RBP9.74□□□□□ -0.85
USP54-209ENST00000464635 AESQ08117 197 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 ATXN7L3Q14CW9 347 aaPredicted RBP9.74□□□□□ -0.85
USP54-209ENST00000464635 HFEQ30201 348 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 TMEM65Q6PI78 240 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 NLRC3Q7RTR2 1065 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 ASCC1Q8N9N2 400 aaKnown RBP9.74□□□□□ -0.85
USP54-209ENST00000464635 OR5T2Q8NGG2 359 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 OR10V1Q8NGI7 309 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 EDARADDQ8WWZ3 215 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 DMRTB1Q96MA1 342 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 GAFA1Q96PS6 74 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 YPEL2Q96QA6 119 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 NARFLQ9H6Q4 476 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 ZFP57Q9NU63 452 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 JPT1Q9UK76 154 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 UBE2J1Q9Y385 318 aaPredicted RBP9.74□□□□□ -0.85
USP54-209ENST00000464635 KIAA2026Q5HYC2 2103 aa9.74□□□□□ -0.85
USP54-209ENST00000464635 ZNF729A6NN14 1252 aaPredicted RBP9.73□□□□□ -0.85
USP54-209ENST00000464635 C12orf77C9JDV5 145 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 BET1O15155 118 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 HBZP02008 142 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 SLC25A4P12235 298 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms