RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TAAR3PQ9P1P4 343 aa10.14□□□□□ -0.79
MSH6-204ENST00000445503 POLDIP2Q9Y2S7 368 aa10.14□□□□□ -0.79
MSH6-204ENST00000445503 LAMA1P25391 3075 aa10.14□□□□□ -0.79
MSH6-204ENST00000445503 TMEM131Q92545 1883 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 STARD6P59095 220 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 ELOBQ15370 118 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 VHLLQ6RSH7 139 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 SMDT1Q9H4I9 107 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 PROK2Q9HC23 129 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 TINAGQ9UJW2 476 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 A0A0G2JRQ6 117 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 HOXA5P20719 270 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H3AP68431 136 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 ZNF506Q5JVG8 444 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 GGNQ86UU5 652 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 H1FOOQ8IZA3 346 aaPredicted RBP10.13□□□□□ -0.79
MSH6-204ENST00000445503 OR2M7Q8NG81 312 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 GALMQ96C23 342 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 RCC1LQ96I51 464 aaKnown RBP10.13□□□□□ -0.79
MSH6-204ENST00000445503 TMEM56Q96MV1 263 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 WFIKKN1Q96NZ8 548 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 ACTR3CQ9C0K3 210 aaPredicted RBP10.13□□□□□ -0.79
MSH6-204ENST00000445503 SIRT7Q9NRC8 400 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 TMEM56-RWDD3S4R434 201 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 EML6Q6ZMW3 1958 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 A0A087X0M5 115 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 A0A1B0GX30 115 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 EGR1P18146 543 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 ID3Q02535 119 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 GAMTQ14353 236 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 ALKBH6Q3KRA9 238 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 SPSB3Q6PJ21 355 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 SLC35E3Q7Z769 313 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 OR2J1Q9GZK6 312 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 CRIM1Q9NZV1 1036 aa10.13□□□□□ -0.79
MSH6-204ENST00000445503 PAGE4O60829 102 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 COX5AP20674 150 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 RAB4BP61018 213 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 SSPNQ14714 243 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 BATFQ16520 125 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 TMEM41BQ5BJD5 291 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 C16orf82Q7Z2V1 217 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 NUFIP2Q7Z417 695 aaKnown RBP10.12□□□□□ -0.79
MSH6-204ENST00000445503 OR10A7Q8NGE5 316 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 PINX1Q96BK5 328 aaKnown RBP10.12□□□□□ -0.79
MSH6-204ENST00000445503 TMEM204Q9BSN7 226 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 REPIN1Q9BWE0 567 aaKnown RBP10.12□□□□□ -0.79
MSH6-204ENST00000445503 PRDM14Q9GZV8 571 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 OPA3Q9H6K4 179 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 PATZ1Q9HBE1 687 aaKnown RBP10.12□□□□□ -0.79
MSH6-204ENST00000445503 LOC102723996A0A087X1L8 192 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 LOC102723971A0A1B0GUV8 181 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 ZNF320A2RRD8 509 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H2BKO60814 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H2BJP06899 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H2BOP23527 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H2BBP33778 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H2BDP58876 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H2BCP62807 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST2H2BEQ16778 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.12□□□□□ -0.79
MSH6-204ENST00000445503 PMS2CLQ68D20 193 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 KCNIP4Q6PIL6 250 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 CRIP3Q6Q6R5 217 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 ZNF826PQ6ZT77 177 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 MDP1Q86V88 176 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H2BHQ93079 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H2BNQ99877 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HIST1H2BMQ99879 126 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 GCM1Q9NP62 436 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 ENY2Q9NPA8 101 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 PLSCR2Q9NRY7 297 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 PSG11Q9UQ72 335 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 K7ESF4 209 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 LILRA1O75019 489 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 IGLV3-1P01715 115 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 SLC25A6P12236 298 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 AESQ08117 197 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 HERPUD1Q15011 391 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 PYY3Q5JQD4 70 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 PRAMEF5Q5TYX0 476 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 PRAMEF6Q5VXH4 476 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 TMPRSS7Q7RTY8 843 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 MRGPRGQ86SM5 289 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 LRP11Q86VZ4 500 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 FGFRL1Q8N441 504 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 ARL6IP6Q8N6S5 226 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 MRPL30Q8TCC3 161 aaKnown RBP10.12□□□□□ -0.79
MSH6-204ENST00000445503 POM121Q96HA1 1249 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 SIGLEC12Q96PQ1 595 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 C1QTNF5Q9BXJ0 243 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 FUT9Q9Y231 359 aa10.12□□□□□ -0.79
MSH6-204ENST00000445503 CBY3A6NI87 242 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 OR5B21A6NL26 309 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 PTBP3O95758 552 aaKnown RBP10.11□□□□□ -0.79
MSH6-204ENST00000445503 OR2H2O95918 312 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 OPN1MWP04001 364 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 OPN1MW2P0DN77 364 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 OPN1MW3P0DN78 364 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 CD46P15529 392 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms