RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 SPINK2P20155 84 aa13.89□□□□□ -0.19
CLCNKA-203ENST00000439316 TESK1Q15569 626 aa13.89□□□□□ -0.19
CLCNKA-203ENST00000439316 FAM90A2PQ658T7 463 aa13.89□□□□□ -0.19
CLCNKA-203ENST00000439316 ZNF525Q8N782 197 aa13.89□□□□□ -0.19
CLCNKA-203ENST00000439316 ZNF610Q8N9Z0 462 aa13.89□□□□□ -0.19
CLCNKA-203ENST00000439316 RNASE11Q8TAA1 199 aaKnown RBP13.89□□□□□ -0.19
CLCNKA-203ENST00000439316 PSMG3Q9BT73 122 aaPredicted RBP13.89□□□□□ -0.19
CLCNKA-203ENST00000439316 RSG1Q9BU20 258 aa13.89□□□□□ -0.19
CLCNKA-203ENST00000439316 CISD1Q9NZ45 108 aaKnown RBP13.89□□□□□ -0.19
CLCNKA-203ENST00000439316 DNAJC13O75165 2243 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 ZNF407Q9C0G0 2248 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 B4DEV8 164 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 C3orf80F5H4A9 247 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 RHBDL1O75783 438 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 IGKV1-5P01602 117 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 BCL2P10415 239 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 MDH2P40926 338 aaKnown RBP13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 CDX1P47902 265 aaPredicted RBP13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 CLN3Q13286 438 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 ACSF3Q4G176 576 aaPredicted RBP13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 NUFIP2Q7Z417 695 aaKnown RBP13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 HAPLN4Q86UW8 402 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 MBD3L1Q8WWY6 194 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 TOLLIPQ9H0E2 274 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 RPRMQ9NS64 109 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 TREM2Q9NZC2 230 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 GNG13Q9P2W3 67 aa13.88□□□□□ -0.19
CLCNKA-203ENST00000439316 APC2O95996 2303 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 ACACAQ13085 2346 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 TGIF2-C20orf24A0A0A6YYL0 155 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 IFITM10A6NMD0 228 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 IGHV2-70P01814 119 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 APLNRP35414 380 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 ARL16Q0P5N6 197 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 ZNF674Q2M3X9 581 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 ZNF787Q6DD87 383 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 SCGB1C1Q8TD33 95 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 IL1F10Q8WWZ1 152 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 RNF150Q9ULK6 438 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 YIF1AO95070 293 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 CD200P41217 278 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 ZNF726P1Q15940 193 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 TMEM251Q8N6I4 163 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 VSIRQ9H7M9 311 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 PSENENQ9NZ42 101 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 DOK5Q9P104 306 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 URGCP-MRPS24S4R325 110 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 DMXL2Q8TDJ6 3036 aa13.87□□□□□ -0.19
CLCNKA-203ENST00000439316 MGAQ8IWI9 3026 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 ATXN7O15265 892 aaPredicted RBP13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 METTL15P1P0C7V9 234 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 IAPPP10997 89 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 CA6P23280 308 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 SOX8P57073 446 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 PNRC1Q12796 327 aaPredicted RBP13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 LRRC75BQ2VPJ9 315 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 ZNF585BQ52M93 769 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 OR2T2Q6IF00 324 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 ZNF497Q6ZNH5 498 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 OR13D1Q8NGV5 346 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 GGACTQ9BVM4 153 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 PARD6GQ9BYG4 376 aaPredicted RBP13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 ZNF665Q9H7R5 613 aa13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 LIN7CQ9NUP9 197 aaKnown RBP13.86□□□□□ -0.19
CLCNKA-203ENST00000439316 CCL11P51671 97 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 RAB11AP62491 216 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 SSX7Q7RTT5 188 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 OR1K1Q8NGR3 316 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 EDARADDQ8WWZ3 215 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 GP6Q9HCN6 339 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 PRSS50Q9UI38 385 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 PPP1R3CQ9UQK1 317 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 ARHGAP21Q5T5U3 1957 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 TRAV39A0A0B4J263 110 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 A0A1W2PR80 420 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 NDUFA6P56556 154 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 HBG1P69891 147 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 HBG2P69892 147 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 SERF2P84101 59 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 IGFBP7Q16270 282 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 C3AR1Q16581 482 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 WDR86Q86TI4 376 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 LURAP1LQ8IV03 231 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 CA5BP1Q8WTZ4 195 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 RCC1LQ96I51 464 aaKnown RBP13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 OR51B6Q9H340 312 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 TMEM242Q9NWH2 141 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 OR14J1Q9UGF5 321 aa13.85□□□□□ -0.19
CLCNKA-203ENST00000439316 ZFP92A6NM28 416 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST1H2BKO60814 126 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 OR2H2O95918 312 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 IL18BPO95998 194 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST1H2BJP06899 126 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST1H2BOP23527 126 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST1H2BBP33778 126 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 RND2P52198 227 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST1H2BDP58876 126 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 ERVK11-1P61568 191 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST1H2BCP62807 126 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST2H2BEQ16778 126 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms