RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-204	ENST00000431283	OR5D13	Q8NGL4	314 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	OR9Q1	Q8NGQ5	310 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	SLC7A13	Q8TCU3	470 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	LRRC29	Q8WV35	223 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	H1FX	Q92522	213 aa	Known RBP	2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283		Q96M85	177 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	CCL13	Q99616	98 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	SIKE1	Q9BRV8	207 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	COPS4	Q9BT78	406 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	VCX	Q9H320	206 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	OR51J1	Q9H342	316 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	RANBP3	Q9H6Z4	567 aa	Predicted RBP	2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	DCLRE1B	Q9H816	532 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	RNPEPL1	Q9HAU8	725 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	SIRT7	Q9NRC8	400 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	PRPF19	Q9UMS4	504 aa	Known RBP	2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	AP3M1	Q9Y2T2	418 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	SIGLEC9	Q9Y336	463 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	N6AMT1	Q9Y5N5	214 aa		2.68	□□□□□ -1.98
PTPN4-204	ENST00000431283	IGHV3OR15-7	A0A075B7D8	119 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283		A0A087WUU8	490 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283		A0A0G2JND7	137 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	TRBV7-9	A0A0J9YWB2	115 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283		A0A1W2PRQ8	180 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	BBIP1	A8MTZ0	92 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	CDC42EP2	O14613	210 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	IMPA2	O14732	288 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	MRAS	O14807	208 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	XRCC2	O43543	280 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	ANGPTL7	O43827	346 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	PTBP3	O95758	552 aa	Known RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	LHB	P01229	141 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	APOC1	P02654	83 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	CFL1	P23528	166 aa	Known RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	IFNGR2	P38484	337 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	GZMM	P51124	257 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	SMIM11A	P58511	58 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	HIST1H3A	P68431	136 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	SLC35A2	P78381	396 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	IL5RA	Q01344	420 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	ZNF92	Q03936	586 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	DGCR6	Q14129	220 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	MAPRE2	Q15555	327 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	LY6E	Q16553	131 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	MEP1B	Q16820	701 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	RSPO1	Q2MKA7	263 aa	Predicted RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	RFX4	Q33E94	735 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	IFI44L	Q53G44	452 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	COQ5	Q5HYK3	327 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	HIST2H3PS2	Q5TEC6	136 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	TBPL2	Q6SJ96	375 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	SMARCD3	Q6STE5	483 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	ZNF826P	Q6ZT77	177 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	HIST2H3A	Q71DI3	136 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	VTCN1	Q7Z7D3	282 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	OR6V1	Q8N148	313 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	FAM216B	Q8N7L0	139 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	CYB561A3	Q8NBI2	242 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	CAPSL	Q8WWF8	208 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	MRPL53	Q96EL3	112 aa	Known RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	DUS3L	Q96G46	650 aa	Known RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	SLC35E1	Q96K37	410 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	ERMAP	Q96PL5	475 aa	Predicted RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	GPX7	Q96SL4	187 aa	Predicted RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	NMNAT3	Q96T66	252 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	MICU1	Q9BPX6	476 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	CDCA4	Q9BXL8	241 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	GPR61	Q9BZJ8	451 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	DNTTIP1	Q9H147	329 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	ANKRD19P	Q9H560	264 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	ABCB9	Q9NP78	766 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	RPRD1B	Q9NQG5	326 aa	Known RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	ZMAT5	Q9UDW3	170 aa	Known RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	CYB5R1	Q9UHQ9	305 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	PITPNC1	Q9UKF7	332 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	B9D1	Q9UPM9	204 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	FOXJ3	Q9UPW0	622 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	SIGLEC7	Q9Y286	467 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	LHFPL6	Q9Y693	200 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	WSB1	Q9Y6I7	421 aa		2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283		V9GYY5	206 aa	Predicted RBP	2.67	□□□□□ -1.98
PTPN4-204	ENST00000431283	NACA	E9PAV3	2078 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	IGLV1-36	A0A0B4J1U3	117 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	LOC100653049	A0A140TA62	436 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	SPRR5	A0A1B0GTR4	108 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	TMEM210	A6NLX4	147 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	DCTN6	O00399	190 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	NDUFAB1	O14561	156 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	CDIPT	O14735	213 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	FFAR1	O14842	300 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	ARPC3	O15145	178 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	ZNF254	O75437	659 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	KRT34	O76011	436 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	CD28	P10747	220 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	IGLL1	P15814	213 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	HIST1H1C	P16403	213 aa	Known RBP	2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	HSD11B1	P28845	292 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	GABRA2	P47869	451 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	TGM4	P49221	684 aa		2.66	□□□□□ -1.98
PTPN4-204	ENST00000431283	PRKX	P51817	358 aa		2.66	□□□□□ -1.98

Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms