RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 OR10J1P30954 320 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 SYT8Q8NBV8 401 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 ADIPOR1Q96A54 375 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 NUDT16L1Q9BRJ7 211 aaKnown RBP13.35□□□□□ -0.27
PTPRF-206ENST00000429895 B4E171 279 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 TSPAN7P41732 249 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 RAB33BQ9H082 229 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 SIRT7Q9NRC8 400 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 LRRC3BQ96PB8 259 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 DCTN5Q9BTE1 182 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 PLAC1Q9HBJ0 212 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 PGA4P0DJD7 388 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 PGA5P0DJD9 388 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 HERPUD1Q15011 391 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 DUX5Q96PT3 197 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 MYH14Q7Z406 1995 aaKnown RBP13.35□□□□□ -0.27
PTPRF-206ENST00000429895 COL22A1Q8NFW1 1626 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-206ENST00000429895 IFITM10A6NMD0 228 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 OR2H2O95918 312 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 CCL19Q99731 98 aa13.35□□□□□ -0.27
PTPRF-206ENST00000429895 FAM53AQ6NSI3 398 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-206ENST00000429895 CBLN2Q8IUK8 224 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 MRPL30Q8TCC3 161 aaKnown RBP13.34□□□□□ -0.27
PTPRF-206ENST00000429895 H3BQ15 152 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 RCC1P18754 421 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-206ENST00000429895 CEACAM21Q3KPI0 293 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 SHISA5Q8N114 240 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 RAB37Q96AX2 223 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 FCGR3AP08637 254 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 CACNA1CQ13936 2221 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 SCN7AQ01118 1682 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 hCG_38984A0A1B0GV85 526 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 MMP9P14780 707 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 RELBQ01201 579 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 BPIFA4PQ86YQ2 179 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 NEURL2Q9BR09 285 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 PXMP4Q9Y6I8 212 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 LEAP2Q969E1 77 aa13.34□□□□□ -0.27
PTPRF-206ENST00000429895 CTXND1A0A1B0GTU2 59 aa13.33□□□□□ -0.27
PTPRF-206ENST00000429895 PRR33A8MZF0 331 aa13.33□□□□□ -0.27
PTPRF-206ENST00000429895 PF4P02776 101 aa13.33□□□□□ -0.27
PTPRF-206ENST00000429895 SSTR5P35346 364 aa13.33□□□□□ -0.27
PTPRF-206ENST00000429895 MRGPRGQ86SM5 289 aa13.33□□□□□ -0.27
PTPRF-206ENST00000429895 TLNRD1Q9H1K6 362 aa13.33□□□□□ -0.27
PTPRF-206ENST00000429895 V9GYH0 126 aa13.33□□□□□ -0.27
PTPRF-206ENST00000429895 A0A1W2PS18 150 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 MGST3O14880 152 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 CA11O75493 328 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 REG1AP05451 166 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 ARF6P62330 175 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 SMAGPQ0VAQ4 97 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 VN1R17PQ8TDU5 208 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 CYB5R1Q9UHQ9 305 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 A1L4Q6 167 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 FCGR2BP31994 310 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-206ENST00000429895 CHAC2Q8WUX2 184 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 MDKP21741 143 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-206ENST00000429895 RFLNBQ8N5W9 214 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 TRPM3Q9HCF6 1732 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-206ENST00000429895 WDFY1Q8IWB7 410 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 OR11H7Q8NGC8 314 aa13.33□□□□□ -0.28
PTPRF-206ENST00000429895 ATP6V0CP27449 155 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 MIXL1Q9H2W2 232 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 AKAP11Q9UKA4 1901 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 MOSPD3O75425 235 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 SCTP09683 121 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 RUNX1Q01196 453 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 MESP2Q0VG99 397 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 HOGA1Q86XE5 327 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 CALHM1Q8IU99 346 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 TMEM229AB2RXF0 380 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 IGKV3-20P01619 116 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 TIMP4Q99727 224 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 IFT22Q9H7X7 185 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 PRR19A6NJB7 356 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 CD74P04233 296 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 CTSSP25774 331 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 FHL5Q5TD97 284 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 CENPVQ7Z7K6 275 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-206ENST00000429895 RAX2Q96IS3 184 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 MOB4Q9Y3A3 225 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 PAM16Q9Y3D7 125 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 TMEM56-RWDD3S4R434 201 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 AHRRA9YTQ3 701 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 WNT9BO14905 357 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 LINC00869P0C866 280 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 C10orf111Q8N326 155 aa13.32□□□□□ -0.28
PTPRF-206ENST00000429895 ELOA3CA0A087WX78 387 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-206ENST00000429895 MPV17P39210 176 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 SCNM1Q9BWG6 230 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 PPIAL4CA0A0B4J2A2 164 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 FBLL1A6NHQ2 334 aaKnown RBP13.31□□□□□ -0.28
PTPRF-206ENST00000429895 THY1P04216 161 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 PPIAL4GP0DN37 164 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 CDCP2Q5VXM1 449 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 ZDHHC8Q9ULC8 765 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 ZNF831Q5JPB2 1677 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 A6NDN8 102 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 PITX3O75364 302 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 P2RY6Q15077 328 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms