RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 IL3RAP26951 378 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 GALR1P47211 349 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CDK9P50750 372 aaKnown RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 GZMMP51124 257 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 POLR2JP52435 117 aaKnown RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 FOXA1P55317 472 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 AP1S1P61966 158 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 RPS11P62280 158 aaKnown RBP eCLIP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 SLC35B1P78383 322 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 FLI1Q01543 452 aaPredicted RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 ST3GAL4Q11206 333 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 ZNF235Q14590 738 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 OR4D1Q15615 310 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 TSNQ15631 228 aaKnown RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 ATP6V1FQ16864 119 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CPTPQ5TA50 214 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 SDHAF4Q5VUM1 108 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CLEC6AQ6EIG7 209 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 SBSNQ6UWP8 590 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 LINC00299Q6ZSB3 139 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 LINC00336Q6ZUF6 198 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 RPS27LQ71UM5 84 aaKnown RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 GLT6D1Q7Z4J2 308 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 DAZ4Q86SG3 579 aaKnown RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 SPATA24Q86W54 205 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 DHFR2Q86XF0 187 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 BBS7Q8IWZ6 715 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 FAM9CQ8IZT9 166 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 OR4K2Q8NGD2 314 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 OR8J3Q8NGG0 315 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 OR51L1Q8NGJ5 315 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 OR9I1Q8NGQ6 314 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 OR10Z1Q8NGY1 313 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 ZNF420Q8TAQ5 688 aaPredicted RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CD200R1Q8TD46 325 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 NAT14Q8WUY8 206 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 TWIST2Q8WVJ9 160 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CANT1Q8WVQ1 401 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 TFGQ92734 400 aaPredicted RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CCDC124Q96CT7 223 aaKnown RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 YIPF6Q96EC8 236 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 C19orf60Q96EN9 201 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 TMA16Q96EY4 203 aaKnown RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 MRPL48Q96GC5 212 aaKnown RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CENPNQ96H22 339 aaPredicted RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CCDC115Q96NT0 180 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 GABRG3Q99928 467 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 BCL7BQ9BQE9 202 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 C9orf16Q9BUW7 83 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 SHCBP1LQ9BZQ2 653 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 LINC00574Q9H8X3 128 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 FANCEQ9HB96 536 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 DAZ1Q9NQZ3 744 aaKnown RBP1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CMTM6Q9NX76 183 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 CCDC167Q9P0B6 97 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 PCTPQ9UKL6 214 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 RAB23Q9ULC3 237 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 RNF11Q9Y3C5 154 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 KLF12Q9Y4X4 402 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 ORC6Q9Y5N6 252 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 ARL5AQ9Y689 179 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 HTTP42858 3142 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 HIVEP2P31629 2446 aa1.29□□□□□ -2.2
PTPRC-208ENST00000427110 FANCMQ8IYD8 2048 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 BRCA2P51587 3418 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 A0A087WXM4 84 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 A0A096LPI6 279 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 IGHV6-1A0A0B4J1U7 121 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 A0A1W2PPV4 95 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 SEC14L6B5MCN3 397 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 LOC730098B7Z3J9 87 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 E5RI56 91 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 CLDN34H7C241 214 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 J3QT63 122 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 M0QX08 132 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 CCL22O00626 93 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 TXNDC9O14530 226 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 OR1I1O60431 355 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 MRPS14O60783 128 aaKnown RBP1.28□□□□□ -2.2
PTPRC-208ENST00000427110 SCN2BO60939 215 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 NIPSNAP2O75323 286 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 STK16O75716 305 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 IL6P05231 212 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 CDK1P06493 297 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 C8GP07360 202 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 LINC00032P0C843 101 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 STAG3L2P0CL84 134 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 HLA-GP17693 338 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 GPX2P18283 190 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 NELFEP18615 380 aaKnown RBP1.28□□□□□ -2.2
PTPRC-208ENST00000427110 MPIP34949 423 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 TGFBR1P36897 503 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 SPAM1P38567 509 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 CSKP41240 450 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 MAGEA2P43356 314 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 HCCSP53701 268 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 OR4D2P58180 307 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 GABARAPL2P60520 117 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 CXCR4P61073 352 aa1.28□□□□□ -2.2
PTPRC-208ENST00000427110 RPS24P62847 133 aaKnown RBP1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms