RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 NBEAQ8NFP9 2946 aa16.84■□□□□ 0.29
USP39-204ENST00000409766 KIAA1324LA8MWY0 1029 aaPredicted RBP16.83■□□□□ 0.28
USP39-204ENST00000409766 CHST1O43916 411 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 APOC3P02656 99 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 SPP1P10451 314 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 EPHA1P21709 976 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 CD40P25942 277 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 VAMP2P63027 116 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 PJVKQ0ZLH3 352 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 Q6ZRM9 215 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 NARS2Q96I59 477 aaKnown RBP16.83■□□□□ 0.28
USP39-204ENST00000409766 MRPL37Q9BZE1 423 aaKnown RBP16.83■□□□□ 0.28
USP39-204ENST00000409766 SLC25A31Q9H0C2 315 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 PARP11Q9NR21 331 aa16.83■□□□□ 0.28
USP39-204ENST00000409766 SPRY3O43610 288 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 NXPH3O95157 252 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 LHBP01229 141 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 IGKV1-5P01602 117 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 ZNF16P17020 682 aaPredicted RBP16.82■□□□□ 0.28
USP39-204ENST00000409766 SSTR5P35346 364 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 BLOC1S1P78537 153 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 GFRALQ6UXV0 394 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 MOGAT3Q86VF5 341 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 ODF3L1Q8IXM7 274 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 ZBTB34Q8NCN2 500 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 OR2D2Q9H210 308 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 FAM212BQ9NTI7 297 aaPredicted RBP16.82■□□□□ 0.28
USP39-204ENST00000409766 COQ3Q9NZJ6 369 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 ZNF835Q9Y2P0 537 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 TMEM218A2RU14 115 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 RNF212BA8MTL3 300 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 SIGLEC5O15389 551 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 ASCL1P50553 236 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 AKR1C2P52895 323 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 PAX9P55771 341 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 SRSF3P84103 164 aaKnown RBP16.82■□□□□ 0.28
USP39-204ENST00000409766 AKR1C1Q04828 323 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 EIF4EBP1Q13541 118 aaPredicted RBP16.82■□□□□ 0.28
USP39-204ENST00000409766 IZUMO4Q1ZYL8 232 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 BTNL8Q6UX41 500 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 ELOVL5Q9NYP7 299 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 RNF150Q9ULK6 438 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 PLCE1Q9P212 2302 aa16.82■□□□□ 0.28
USP39-204ENST00000409766 ABCD4O14678 606 aa16.81■□□□□ 0.28
USP39-204ENST00000409766 RNASE11Q8TAA1 199 aaKnown RBP16.81■□□□□ 0.28
USP39-204ENST00000409766 ITLN1Q8WWA0 313 aa16.81■□□□□ 0.28
USP39-204ENST00000409766 NINJ1Q92982 152 aa16.81■□□□□ 0.28
USP39-204ENST00000409766 C5orf30Q96GV9 206 aa16.81■□□□□ 0.28
USP39-204ENST00000409766 C15orf65H3BRN8 121 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 WRBO00258 174 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 PPP1CCP36873 323 aaKnown RBP16.8■□□□□ 0.28
USP39-204ENST00000409766 GATA4P43694 442 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 LYPD6BQ8NI32 183 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 SNRNP40Q96DI7 357 aaKnown RBP16.8■□□□□ 0.28
USP39-204ENST00000409766 CACNG5Q9UF02 275 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 IGHV3OR15-7A0A075B7D8 119 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 C16orf97H3BN30 126 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 DANCRP0C864 163 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 OMGP23515 440 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 SELENOVP59797 346 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 EDDM3AQ14507 147 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 TRAT1Q6PIZ9 186 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 Q6ZRG5 221 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 ZNF295-AS1Q8N0V1 137 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 SNX22Q96L94 193 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 DCTN5Q9BTE1 182 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 SH3BGRL3Q9H299 93 aa16.8■□□□□ 0.28
USP39-204ENST00000409766 ESRP2Q9H6T0 727 aaKnown RBP16.8■□□□□ 0.28
USP39-204ENST00000409766 F2RL1P55085 397 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 BAXQ07812 192 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 ZNF266Q14584 549 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 CLINT1Q14677 625 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 MSMO1Q15800 293 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 HSD17B11Q8NBQ5 300 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 NUP37Q8NFH4 326 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 JKAMPQ9P055 326 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 ICE1Q9Y2F5 2266 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 USF3Q68DE3 2245 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 MGST3O14880 152 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 HTD2P86397 168 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 BTN1A1Q13410 526 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 SWI5Q1ZZU3 235 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 PRR30Q53SZ7 412 aaPredicted RBP16.79■□□□□ 0.28
USP39-204ENST00000409766 ATRAIDQ6UW56 229 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 TMEM108Q6UXF1 575 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.79■□□□□ 0.28
USP39-204ENST00000409766 RFESDQ8TAC1 157 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 SH3BGRL2Q9UJC5 107 aa16.79■□□□□ 0.28
USP39-204ENST00000409766 ODAMA1E959 279 aa16.78■□□□□ 0.28
USP39-204ENST00000409766 MEX3AA1L020 520 aaKnown RBP16.78■□□□□ 0.28
USP39-204ENST00000409766 SPINT2O43291 252 aa16.78■□□□□ 0.28
USP39-204ENST00000409766 CST7O76096 145 aa16.78■□□□□ 0.28
USP39-204ENST00000409766 RPL30P62888 115 aaKnown RBP16.78■□□□□ 0.28
USP39-204ENST00000409766 CR1LQ2VPA4 569 aa16.78■□□□□ 0.28
USP39-204ENST00000409766 OR5C1Q8NGR4 320 aa16.78■□□□□ 0.28
USP39-204ENST00000409766 PPP1R35Q8TAP8 253 aa16.78■□□□□ 0.28
USP39-204ENST00000409766 LRRC46Q96FV0 321 aa16.78■□□□□ 0.28
USP39-204ENST00000409766 RAB40CQ96S21 281 aa16.78■□□□□ 0.28
USP39-204ENST00000409766 IL19Q9UHD0 177 aa16.78■□□□□ 0.28
USP39-204ENST00000409766 PTPRQQ9UMZ3 2332 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms