RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ABHD12Q8N2K0 398 aa9.81□□□□□ -0.84
TTC28-201ENST00000397906 MANBALQ9NQG1 85 aa9.81□□□□□ -0.84
TTC28-201ENST00000397906 PARP14Q460N5 1801 aa9.81□□□□□ -0.84
TTC28-201ENST00000397906 RFPL3SP0C7P2 107 aa9.81□□□□□ -0.84
TTC28-201ENST00000397906 PNKDQ8N490 385 aa9.81□□□□□ -0.84
TTC28-201ENST00000397906 FADS6Q8N9I5 356 aa9.81□□□□□ -0.84
TTC28-201ENST00000397906 LPAR5Q9H1C0 372 aa9.81□□□□□ -0.84
TTC28-201ENST00000397906 BSPH1Q075Z2 132 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 TUBGCP6Q96RT7 1819 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 CEACAM18A8MTB9 384 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 IGHV3-23P01764 117 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 ADIPOR1Q96A54 375 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 TRAV34A0A0B4J273 112 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 IGSF23A1L1A6 192 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 M0R2Z0 102 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 NANOS3P60323 173 aaKnown RBP9.8□□□□□ -0.84
TTC28-201ENST00000397906 C1orf174Q8IYL3 243 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 Q9N2K0 584 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 WNK3Q9BYP7 1800 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 RPL27AP46776 148 aaKnown RBP9.8□□□□□ -0.84
TTC28-201ENST00000397906 IL24Q13007 206 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 VAMP3Q15836 100 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 TUBA4BQ9H853 241 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 AANATQ16613 207 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 TMEM255AQ5JRV8 349 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 MTCL1Q9Y4B5 1905 aaKnown RBP9.8□□□□□ -0.84
TTC28-201ENST00000397906 MGST3O14880 152 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 AREGP15514 252 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 KLF9Q13886 244 aaPredicted RBP9.8□□□□□ -0.84
TTC28-201ENST00000397906 LMX1BO60663 402 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 FCGR3AP08637 254 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 MRPL54Q6P161 138 aaKnown RBP9.8□□□□□ -0.84
TTC28-201ENST00000397906 ZNF645Q8N7E2 425 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 KLK13Q9UKR3 277 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 HPRT1P00492 218 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 LGALSLQ3ZCW2 172 aaPredicted RBP9.8□□□□□ -0.84
TTC28-201ENST00000397906 VKORC1L1Q8N0U8 176 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 POM121Q96HA1 1249 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 OR4C12Q96R67 309 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 MFSD2BA6NFX1 497 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 SCTP09683 121 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 SCGB1D4Q6XE38 83 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 LRRC75AQ8NAA5 344 aa9.8□□□□□ -0.84
TTC28-201ENST00000397906 DOCK3Q8IZD9 2030 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 P2RY1P47900 373 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 IZUMO4Q1ZYL8 232 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 LINC00299Q6ZSB3 139 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 GBGT1Q8N5D6 347 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 EIF4E3Q8N5X7 224 aaKnown RBP9.79□□□□□ -0.84
TTC28-201ENST00000397906 LURAP1Q96LR2 239 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 MYOFQ9NZM1 2061 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 IGHV3-35A0A0C4DH35 117 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 OR1L6Q8NGR2 347 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 FAM168AQ92567 244 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 ADAMTS7Q9UKP4 1686 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 SUCLG1P53597 346 aaKnown RBP9.79□□□□□ -0.84
TTC28-201ENST00000397906 PMS2P11Q13670 270 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 NUDT16L1Q9BRJ7 211 aaKnown RBP9.79□□□□□ -0.84
TTC28-201ENST00000397906 SLC35B3Q9H1N7 401 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 AKIRIN1Q9H9L7 192 aaPredicted RBP9.79□□□□□ -0.84
TTC28-201ENST00000397906 TO15178 435 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 DXOO77932 396 aaKnown RBP9.79□□□□□ -0.84
TTC28-201ENST00000397906 A0A1W2PP11 408 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 RBFOX3A6NFN3 312 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 GREM1O60565 184 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 PAGE4O60829 102 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 EWSR1Q01844 656 aaKnown RBP eCLIP9.79□□□□□ -0.84
TTC28-201ENST00000397906 PRSS53Q2L4Q9 553 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 IGKV3OR2-268A0A0C4DH90 116 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 HNRNPA3P51991 378 aaKnown RBP9.79□□□□□ -0.84
TTC28-201ENST00000397906 ATP5G2Q06055 141 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 ZP4Q12836 540 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 MELTFP08582 738 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 PSMB2P49721 201 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 FAM181AQ8N9Y4 354 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 NINQ8N4C6 2090 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 SYNGR3O43761 229 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 LTBRP36941 435 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 TMEM78Q5T7P6 136 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 PIKFYVEQ9Y2I7 2098 aa9.79□□□□□ -0.84
TTC28-201ENST00000397906 LAMTOR1Q6IAA8 161 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 PAXXQ9BUH6 204 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 CALYQ9NYX4 217 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 PPP1R32Q7Z5V6 425 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 DDB2Q92466 427 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 A0A0U1RQV5 110 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 RPL8P62917 257 aaKnown RBP9.78□□□□□ -0.84
TTC28-201ENST00000397906 PRB3Q04118 309 aaPredicted RBP9.78□□□□□ -0.84
TTC28-201ENST00000397906 PRSS27Q9BQR3 290 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 XIRP1Q702N8 1843 aaKnown RBP9.78□□□□□ -0.84
TTC28-201ENST00000397906 FGF12P61328 243 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 IL36RNQ9UBH0 155 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 CDKN1AP38936 164 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 SPSB2Q99619 263 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 IGHV3-48P01763 117 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 LDLRAD3Q86YD5 345 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 A0A0G2JMM0 328 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 A0A1W2PPB8 328 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 A0A1W2PRS3 328 aa9.78□□□□□ -0.84
TTC28-201ENST00000397906 KIR3DP1A8MWS1 328 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms