RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 UNC80Q8N2C7 3258 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 A0A096LPE4 126 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 CTXND1A0A1B0GTU2 59 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 A0A1W2PPZ6 126 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 PINLYPA6NC86 204 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 SOX15O60248 233 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 VENTXO95231 258 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 LY86O95711 162 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 CER1O95813 267 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 NGFP01138 241 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 IGHV3-9P01782 118 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 IAPPP10997 89 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 PAX1P15863 534 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 C9orf152Q5JTZ5 239 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 DCAF12Q5T6F0 453 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 SLC23A3Q6PIS1 610 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 C6orf15Q6UXA7 325 aaPredicted RBP8.47□□□□□ -1.05
COL17A1-203ENST00000393211 DBX2Q6ZNG2 339 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 TUSC5Q8IXB3 177 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 NANOS1Q8WY41 292 aaKnown RBP8.47□□□□□ -1.05
COL17A1-203ENST00000393211 LHX4Q969G2 390 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 ACY3Q96HD9 319 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 PACRGQ96M98 296 aaPredicted RBP8.47□□□□□ -1.05
COL17A1-203ENST00000393211 OR5B12Q96R08 314 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 HIST1H2BLQ99880 126 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 SMIM7Q9BQ49 75 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 RTL8AQ9BWD3 113 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 MRPL37Q9BZE1 423 aaKnown RBP8.47□□□□□ -1.05
COL17A1-203ENST00000393211 VSIRQ9H7M9 311 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 ZNF703Q9H7S9 590 aaPredicted RBP8.47□□□□□ -1.05
COL17A1-203ENST00000393211 HSPB7Q9UBY9 170 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 POLDIP2Q9Y2S7 368 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 PI4KAP42356 2102 aa8.46□□□□□ -1.05
COL17A1-203ENST00000393211 TMEM265A0A087WTH1 108 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 MKRN2OSH3BPM6 223 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 SLC33A1O00400 549 aaPredicted RBP8.46□□□□□ -1.06
COL17A1-203ENST00000393211 FABP4P15090 132 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 FAM3BP58499 235 aaPredicted RBP8.46□□□□□ -1.06
COL17A1-203ENST00000393211 ERVK11-1P61568 191 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 TNFRSF9Q07011 255 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 CLN3Q13286 438 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 JOSD1Q15040 202 aaPredicted RBP8.46□□□□□ -1.06
COL17A1-203ENST00000393211 BSXQ3C1V8 233 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 GFI1BQ5VTD9 330 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 SSX7Q7RTT5 188 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 OR2M7Q8NG81 312 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 OR4X1Q8NH49 305 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 S100PBPQ96BU1 408 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 CIB3Q96Q77 187 aaPredicted RBP8.46□□□□□ -1.06
COL17A1-203ENST00000393211 TMEM147Q9BVK8 224 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 ACTR3CQ9C0K3 210 aaPredicted RBP8.46□□□□□ -1.06
COL17A1-203ENST00000393211 RBKSQ9H477 322 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 OR1A1Q9P1Q5 309 aa8.46□□□□□ -1.06
COL17A1-203ENST00000393211 RBM7Q9Y580 266 aaKnown RBP8.46□□□□□ -1.06
COL17A1-203ENST00000393211 KMT2EQ8IZD2 1858 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 SH2D1BO14796 132 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 GCGP01275 180 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 TYMSP04818 313 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 CFIP05156 583 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 P0C879 139 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 PGA5P0DJD9 388 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 CCL2P13500 99 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 FGF7P21781 194 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 DDTP30046 118 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 SRP14P37108 136 aaKnown RBP8.45□□□□□ -1.06
COL17A1-203ENST00000393211 PDLIM4P50479 330 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 FGF8P55075 233 aaPredicted RBP8.45□□□□□ -1.06
COL17A1-203ENST00000393211 ZNF146Q15072 292 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 TMEM249Q2WGJ8 235 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 SPANXN5Q5MJ07 72 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 FGFRL1Q8N441 504 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 RPP25LQ8N5L8 163 aaKnown RBP8.45□□□□□ -1.06
COL17A1-203ENST00000393211 DRAM1Q8N682 238 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 OR51G1Q8NGK1 321 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 OR1P1Q8NH06 330 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 IL1F10Q8WWZ1 152 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 C14orf144Q96I85 54 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 GPR87Q9BY21 358 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 FSCN3Q9NQT6 498 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 ABI3Q9P2A4 366 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 TRAPPC2LQ9UL33 140 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 PPP1R3CQ9UQK1 317 aa8.45□□□□□ -1.06
COL17A1-203ENST00000393211 ZNF503-AS2A6NEH8 195 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 PPP5D1E7EU14 171 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 H7BYZ3 331 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 HAX1O00165 279 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 OR2H2O95918 312 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 HRASP01112 189 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 COX5AP20674 150 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 IL2RGP31785 369 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 CEACAM6P40199 344 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 WNT5AP41221 380 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 RPL23P62829 140 aaKnown RBP8.44□□□□□ -1.06
COL17A1-203ENST00000393211 CATR1Q13166 79 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 GAMTQ14353 236 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 ADIRFQ15847 76 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 IZUMO4Q1ZYL8 232 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 VWC2Q2TAL6 325 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 ACOT6Q3I5F7 207 aaPredicted RBP8.44□□□□□ -1.06
COL17A1-203ENST00000393211 FIP1L1Q6UN15 594 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms