RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 C1RLQ9NZP8 487 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 ROS1P08922 2347 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CACNA1HO95180 2353 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 TRBV9A0A0B4J1U6 114 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CYB5R3P00387 301 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-208ENST00000367256 AMY1AP04745 511 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CEACAM5P06731 702 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 FZD5Q13467 585 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 KCNMB1Q16558 191 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 TEPPQ6URK8 271 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 TMEM136Q6ZRR5 245 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 MRGPRFQ96AM1 343 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 TMEM189A5PLL7 270 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CTSVO60911 334 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 HSPB1P04792 205 aaKnown RBP6.42□□□□□ -1.38
SYNE1-208ENST00000367256 DEFB123Q8N688 67 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 HARBI1Q96MB7 349 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 MIXL1Q9H2W2 232 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 RNF122Q9H9V4 155 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 GLRX2Q9NS18 164 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 PEX11BO96011 259 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 SAPCD1Q5SSQ6 148 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 TDHQ8IZJ6 230 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 PAGE4O60829 102 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 PSMG4Q5JS54 123 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 MOGAT3Q86VF5 341 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 Q8WTZ3 238 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 PAXXQ9BUH6 204 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 MRM2Q9UI43 246 aaKnown RBP6.41□□□□□ -1.38
SYNE1-208ENST00000367256 DSPPQ9NZW4 1301 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 A0A1W2PRD5 423 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 A0A1W2PRF3 423 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 A0A1W2PRM7 423 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 NKX2-6A6NCS4 301 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 JOSD1Q15040 202 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-208ENST00000367256 LDLRAD3Q86YD5 345 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 NFAM1Q8NET5 270 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-208ENST00000367256 NUBPLQ8TB37 319 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 FBLIM1Q8WUP2 373 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 MS4A4AQ96JQ5 239 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 METTL26Q96S19 204 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 PMCHL2Q9BQD1 86 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 GLI3P10071 1580 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 OR4C45A6NMZ5 311 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 MYF5P13349 255 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 ROM1Q03395 351 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 FOXC1Q12948 553 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 SLC25A40Q8TBP6 338 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 GNRHR2Q96P88 292 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 GPA33Q99795 319 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 NMBP08949 121 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 FSTP19883 344 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 ZNF793Q6ZN11 406 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 REC114Q7Z4M0 266 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 FCARP24071 287 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 WNT5AP41221 380 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 ZNF79Q15937 498 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 PLPPR5Q32ZL2 321 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 TP53I13Q8NBR0 393 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-208ENST00000367256 MMP16P51512 607 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 LIMS2Q7Z4I7 341 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 F11RQ9Y624 299 aaKnown RBP6.41□□□□□ -1.38
SYNE1-208ENST00000367256 STRCP1A6NGW2 1772 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 SPTY2D1-AS1A0A0U1RR47 76 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 HYAL3O43820 417 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-208ENST00000367256 HBZP02008 142 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 B4GALNT1Q00973 533 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 EIF3IQ13347 325 aaKnown RBP6.41□□□□□ -1.38
SYNE1-208ENST00000367256 GGTLC2Q14390 218 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 TREM2Q9NZC2 230 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 PAPPAQ13219 1627 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 IGKV3-7A0A075B6H7 116 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 IGHV3OR15-7A0A075B7D8 119 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 A0A1W2PQD3 144 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 C9orf172C9J069 976 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 AESQ08117 197 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 SPEM1Q8N4L4 309 aa6.41□□□□□ -1.38
SYNE1-208ENST00000367256 MS4A7Q9GZW8 240 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-208ENST00000367256 TET2Q6N021 2002 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-208ENST00000367256 KBTBD11O94819 623 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 HLA-DQB1P01920 261 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 MAS1LP35410 378 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 RAC3P60763 192 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 RHOVQ96L33 236 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 PARD6GQ9BYG4 376 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-208ENST00000367256 OR2H1Q9GZK4 316 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 ADAP1O75689 374 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 ADAD2Q8NCV1 583 aaKnown RBP6.4□□□□□ -1.38
SYNE1-208ENST00000367256 DOCK4Q8N1I0 1966 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 MFAP2P55001 183 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 EWSR1Q01844 656 aaKnown RBP eCLIP6.4□□□□□ -1.38
SYNE1-208ENST00000367256 MEF2BQ02080 365 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-208ENST00000367256 OR10J6PQ8NGY7 276 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 RAB33BQ9H082 229 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 RALGAPA2Q2PPJ7 1873 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 SYNGR1O43759 233 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 PSG2P11465 335 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 DLX6P56179 175 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 KRTCAP3Q53RY4 240 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 C1orf174Q8IYL3 243 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms