RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 COLCA1Q6ZS62 124 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF295-AS1Q8N0V1 137 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 TPRX1Q8N7U7 411 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 OR5A2Q8NGI9 324 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 SNIP1Q8TAD8 396 aaKnown RBP10.3□□□□□ -0.76
CLIP3-201ENST00000360535 MALSU1Q96EH3 234 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 UFSP2Q9NUQ7 469 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 CNOT1A5YKK6 2376 aaKnown RBP10.29□□□□□ -0.76
CLIP3-201ENST00000360535 MAP1LC3B2A6NCE7 125 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 CXorf65A6NEN9 183 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 NXPH2O95156 264 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 IGKV1-5P01602 117 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 SERPINA7P05543 415 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 CELA3BP08861 270 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 BCL2P10415 239 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 LHX2P50458 406 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 OR1C1Q15619 314 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 ALKBH6Q3KRA9 238 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF573Q86YE8 665 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 GATAD1Q8WUU5 269 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 OR5P3Q8WZ94 311 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 MAP1LC3BQ9GZQ8 125 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 CACNA1GO43497 2377 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 BOD1L1Q8NFC6 3051 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 CLEC18AA5D8T8 446 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 G6PCP35575 357 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 IDH3GP51553 393 aaPredicted RBP10.29□□□□□ -0.76
CLIP3-201ENST00000360535 FAM90A2PQ658T7 463 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 C1orf87Q8N0U7 546 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 CLEC18CQ8NCF0 446 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 ABHD5Q8WTS1 349 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 POM121L2Q96KW2 1035 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 YPEL4Q96NS1 127 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 RAB40CQ96S21 281 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 SMIM7Q9BQ49 75 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 B4GALT7Q9UBV7 327 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 CLN8Q9UBY8 286 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 ROS1P08922 2347 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 A0A1B0GV90 55 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 LAMTOR5O43504 91 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 IGHV3-13P01766 116 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 IGHV3-7P01780 117 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 RTP5Q14D33 572 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 HAPLN4Q86UW8 402 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 ZFHX4Q86UP3 3567 aa10.29□□□□□ -0.76
CLIP3-201ENST00000360535 IGHV3-43A0A0B4J1X8 118 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 A0A1B0GU03 582 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 A0A1B0GW64 132 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 DEFB108AA8MXU0 73 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 SOX15O60248 233 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF737O75373 536 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 NEURL1O76050 574 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 OR2H2O95918 312 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 IGHV3-43DP0DP04 118 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 MDH2P40926 338 aaKnown RBP10.28□□□□□ -0.76
CLIP3-201ENST00000360535 CLDN18P56856 261 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 H1FOOQ8IZA3 346 aaPredicted RBP10.28□□□□□ -0.76
CLIP3-201ENST00000360535 GCNT2Q8N0V5 402 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF525Q8N782 197 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 RFESDQ8TAC1 157 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 TTTY12Q9BZ98 90 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 SMDT1Q9H4I9 107 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 FZR1Q9UM11 496 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 EP300Q09472 2414 aaPredicted RBP10.28□□□□□ -0.76
CLIP3-201ENST00000360535 CLDN34H7C241 214 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 RAMP3O60896 148 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 GAMTQ14353 236 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 SSPNQ14714 243 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF826PQ6ZT77 177 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 SSX9Q7RTT3 188 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 MDP1Q86V88 176 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 TMEM251Q8N6I4 163 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 OR2J1Q9GZK6 312 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 HBG1P69891 147 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 HBG2P69892 147 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 SLC38A11Q08AI6 406 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 SLC35E3Q7Z769 313 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 FAM173AQ9BQD7 235 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 FAM234AQ9H0X4 552 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF703Q9H7S9 590 aaPredicted RBP10.28□□□□□ -0.76
CLIP3-201ENST00000360535 LAMP3Q9UQV4 416 aa10.28□□□□□ -0.76
CLIP3-201ENST00000360535 FAM90A10PA6NDY2 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A18PA6NE21 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A16PA6NEW6 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A20PA6NIJ5 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A8PA6NJQ4 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A7PA6NKC0 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A22PA8MWA6 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A12PA8MX19 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A5PA8MXJ8 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A23PA8MXZ1 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 CER1O95813 267 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 CYC1P08574 325 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A15PP0C7V4 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A13PP0C7W8 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A14PP0C7W9 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FAM90A24PP0C7X0 464 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 C1QL4Q86Z23 238 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FGFRL1Q8N441 504 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 MEGF10Q96KG7 1140 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 146.5 ms