RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ZNF845Q96IR2 970 aaPredicted RBP19.02■□□□□ 0.63
TRIM28-202ENST00000341753 CTDSP1Q9GZU7 261 aa19.02■□□□□ 0.63
TRIM28-202ENST00000341753 SLC39A9Q9NUM3 307 aa19.02■□□□□ 0.63
TRIM28-202ENST00000341753 TRAPPC2LH3BP13 241 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 IGKV1-5P01602 117 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 RFPL3SP0C7P2 107 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 OTX2P32243 289 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 RPS16P62249 146 aaKnown RBP19.01■□□□□ 0.63
TRIM28-202ENST00000341753 LRRC75BQ2VPJ9 315 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 BSXQ3C1V8 233 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 TMEM41BQ5BJD5 291 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 ZNF324BQ6AW86 544 aaPredicted RBP19.01■□□□□ 0.63
TRIM28-202ENST00000341753 ZDHHC23Q8IYP9 409 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 RPP25LQ8N5L8 163 aaKnown RBP19.01■□□□□ 0.63
TRIM28-202ENST00000341753 SF3B5Q9BWJ5 86 aaKnown RBP19.01■□□□□ 0.63
TRIM28-202ENST00000341753 FUT9Q9Y231 359 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 OR2W1Q9Y3N9 320 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 TNRC6BQ9UPQ9 1833 aaKnown RBP19.01■□□□□ 0.63
TRIM28-202ENST00000341753 PPP5D1E7EU14 171 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 H7BYZ3 331 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 MMP7P09237 267 aaPredicted RBP19.01■□□□□ 0.63
TRIM28-202ENST00000341753 TDGF1P13385 188 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 RPL23P62829 140 aaKnown RBP19.01■□□□□ 0.63
TRIM28-202ENST00000341753 GGNQ86UU5 652 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 P2RX4Q99571 388 aa19.01■□□□□ 0.63
TRIM28-202ENST00000341753 NTN3O00634 580 aaPredicted RBP19■□□□□ 0.63
TRIM28-202ENST00000341753 LAMTOR5O43504 91 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 TRAPPC6AO75865 159 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 B3GALT5-AS1P59052 145 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 OR10D3Q8NH80 312 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 DDA1Q9BW61 102 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 R4GN57 208 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 KIAA1549Q9HCM3 1950 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 CBR3O75828 277 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 OR4A8P0C604 315 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 DEFA4P12838 97 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 MEF2BQ02080 365 aaPredicted RBP19■□□□□ 0.63
TRIM28-202ENST00000341753 PMS2P11Q13670 270 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 WIPI1Q5MNZ9 446 aaPredicted RBP19■□□□□ 0.63
TRIM28-202ENST00000341753 UBALD2Q8IYN6 164 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 OR51G1Q8NGK1 321 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 C1QTNF5Q9BXJ0 243 aa19■□□□□ 0.63
TRIM28-202ENST00000341753 WDR61Q9GZS3 305 aaKnown RBP19■□□□□ 0.63
TRIM28-202ENST00000341753 ZNF552Q9H707 407 aaPredicted RBP19■□□□□ 0.63
TRIM28-202ENST00000341753 FREM1Q5H8C1 2179 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 TCAPO15273 167 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 IFNA1P01562 189 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 S100GP29377 79 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 RNPS1Q15287 305 aaKnown RBP18.99■□□□□ 0.63
TRIM28-202ENST00000341753 ABLIM2Q6H8Q1 611 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 OR2Y1Q8NGV0 311 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 NDUFAF3Q9BU61 184 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 KCNS2Q9ULS6 477 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 C5orf49A4QMS7 147 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 PCBD1P61457 104 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 GNB2P62879 340 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 CYP2G1PQ6ZSU1 146 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 RNASEH2CQ8TDP1 164 aaKnown RBP18.99■□□□□ 0.63
TRIM28-202ENST00000341753 PSMF1Q92530 271 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 SGCZQ96LD1 299 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 OR5B12Q96R08 314 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 PSMG3Q9BT73 122 aaPredicted RBP18.99■□□□□ 0.63
TRIM28-202ENST00000341753 OR51B6Q9H340 312 aa18.99■□□□□ 0.63
TRIM28-202ENST00000341753 RBM7Q9Y580 266 aaKnown RBP18.99■□□□□ 0.63
TRIM28-202ENST00000341753 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.98■□□□□ 0.63
TRIM28-202ENST00000341753 MKXQ8IYA7 352 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 Q8NFD4 153 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 SPSB4Q96A44 273 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 ADGRG7Q96K78 797 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 TECTBQ96PL2 329 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 PARLQ9H300 379 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 CTXN2P0C2S0 81 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 Q0VFX4 171 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 MRPL21Q7Z2W9 205 aaKnown RBP18.98■□□□□ 0.63
TRIM28-202ENST00000341753 OR10V1Q8NGI7 309 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 RAB24Q969Q5 203 aa18.98■□□□□ 0.63
TRIM28-202ENST00000341753 ACTR3CQ9C0K3 210 aaPredicted RBP18.98■□□□□ 0.63
TRIM28-202ENST00000341753 AURKAIP1Q9NWT8 199 aaPredicted RBP18.98■□□□□ 0.63
TRIM28-202ENST00000341753 URB1O60287 2271 aaKnown RBP18.98■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A10PA6NDY2 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A18PA6NE21 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A16PA6NEW6 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A20PA6NIJ5 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A8PA6NJQ4 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A7PA6NKC0 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 GJE1A6NN92 205 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A22PA8MWA6 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A12PA8MX19 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A5PA8MXJ8 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A23PA8MXZ1 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 KBTBD11O94819 623 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A15PP0C7V4 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A13PP0C7W8 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A14PP0C7W9 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FAM90A24PP0C7X0 464 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 BMP5P22003 454 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 NUBP1P53384 320 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 HBG1P69891 147 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 HBG2P69892 147 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 OR4F5Q8NH21 305 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms