RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 OR1L8Q8NGR8 309 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 C14orf79Q96F83 325 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF714Q96N38 554 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 CNTNAP3BQ96NU0 1288 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 OR2D2Q9H210 308 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 HES4Q9HCC6 221 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 V9GYS6 101 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 ANKRD34BA5PLL1 514 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF705EA8MWA4 302 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-201ENST00000335508 TM4SF5O14894 197 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 HLXQ14774 488 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-201ENST00000335508 SNAI3Q3KNW1 292 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 SP6Q3SY56 376 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 TMED6Q8WW62 240 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 TMEM186Q96B77 213 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 FLYWCH2Q96CP2 140 aaKnown RBP5.87□□□□□ -1.47
SF3B1-201ENST00000335508 CALYQ9NYX4 217 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 IGHV1-69-2A0A0G2JMI3 117 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 F8W036 122 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 MPZP25189 248 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 ATP5J2P56134 94 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 PIGYQ3MUY2 71 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 RBMXL3Q8N7X1 1067 aaKnown RBP5.86□□□□□ -1.47
SF3B1-201ENST00000335508 FAM213BQ8TBF2 198 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF355PQ9NSJ1 428 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 TMEM106BQ9NUM4 274 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 TNCP24821 2201 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 FANCMQ8IYD8 2048 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 ERVH48-1M5A8F1 160 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 CCSO14618 274 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 HPRT1P00492 218 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 GAPDHP04406 335 aaKnown RBP5.86□□□□□ -1.47
SF3B1-201ENST00000335508 OR8U8P0C7N1 319 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 HTR1DP28221 377 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 SSTR2P30874 369 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 SELENOTP62341 195 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 PDCD1Q15116 288 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF529Q6P280 563 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 MOB3BQ86TA1 216 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 SVBPQ8N300 66 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 SAT2Q96F10 170 aaPredicted RBP5.86□□□□□ -1.47
SF3B1-201ENST00000335508 NIPSNAP3BQ9BS92 247 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 UBTD1Q9HAC8 227 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 CCL28Q9NRJ3 127 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 NCOA6Q14686 2063 aaPredicted RBP5.86□□□□□ -1.47
SF3B1-201ENST00000335508 A0A0A6YYJ9 748 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 K7EQM0 130 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 RBFOX2O43251 390 aaKnown RBP eCLIP5.86□□□□□ -1.473e-10■■□□□ 14.1
SF3B1-201ENST00000335508 IGKV3-15P01624 115 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 PGA5P0DJD9 388 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 MMP9P14780 707 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 PPT1P50897 306 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 FAM166AQ6J272 317 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 UBALD1Q8TB05 177 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 PCNPQ8WW12 178 aaKnown RBP5.86□□□□□ -1.47
SF3B1-201ENST00000335508 RAB24Q969Q5 203 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 SOX7Q9BT81 388 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 CFHR2P36980 270 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 CDC34P49427 236 aaPredicted RBP5.86□□□□□ -1.47
SF3B1-201ENST00000335508 TMEM217Q8N7C4 229 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 OR2G3Q8NGZ4 309 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 SLC25A32Q9H2D1 315 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 RALYQ9UKM9 306 aaKnown RBP5.86□□□□□ -1.47
SF3B1-201ENST00000335508 MGAM2Q2M2H8 2515 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 SNAPINO95295 136 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 P2RY4P51582 365 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 IFITM3Q01628 133 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 C20orf204Q6ZNR8 217 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 CALHM1Q8IU99 346 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 GAPTQ8N292 157 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 STXBP6Q8NFX7 210 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 SLC25A15Q9Y619 301 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 KPTNQ9Y664 436 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 STAB1Q9NY15 2570 aa5.86□□□□□ -1.47
SF3B1-201ENST00000335508 FER1L5A0AVI2 2057 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 CORTO00230 105 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 DKK1O94907 266 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 YIF1AO95070 293 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 HPXP02790 462 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 TMEM50BP56557 158 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 RNFT1Q5M7Z0 435 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF826PQ6ZT77 177 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 LURAP1Q96LR2 239 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 CCL13Q99616 98 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 MS4A7Q9GZW8 240 aaPredicted RBP5.85□□□□□ -1.47
SF3B1-201ENST00000335508 SPRR3Q9UBC9 169 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 IGKV1-9A0A0C4DH69 117 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 HSD17B6O14756 317 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 HBZP02008 142 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 OR5AC1P0C628 307 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 DAOP14920 347 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 OR2B11Q5JQS5 317 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 HARBI1Q96MB7 349 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 CITED2Q99967 270 aaPredicted RBP5.85□□□□□ -1.47
SF3B1-201ENST00000335508 TMEM222Q9H0R3 208 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 PSENENQ9NZ42 101 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF292O60281 2723 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 TRIM77I1YAP6 450 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 BCL2L11O43521 198 aa5.85□□□□□ -1.47
SF3B1-201ENST00000335508 MPDU1O75352 247 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms