RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 C1QTNF9BB2RNN3 333 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 RPS11P62280 158 aaKnown RBP eCLIP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 LINC00469Q8N7U9 141 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 OR10D3Q8NH80 312 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 EML5Q05BV3 1969 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 HOXC4P09017 264 aaPredicted RBP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 OR5A1Q8NGJ0 315 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 SSMEM1Q8WWF3 244 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 VWA8A3KMH1 1905 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 A0A087WWC5 75 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 SS18L1O75177 396 aaPredicted RBP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 RPS4XP62701 263 aaKnown RBP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 KLRB1Q12918 225 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 TRA2AQ13595 282 aaKnown RBP eCLIP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 SAMD13Q5VXD3 122 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 OLIG3Q7RTU3 272 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 WSB2Q9NYS7 404 aaPredicted RBP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 SORL1Q92673 2214 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 C17orf51A8MQB3 221 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 NPIPB9F8W1W9 429 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 GGTLC2Q14390 218 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 NKG7Q16617 165 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 FBXO46Q6PJ61 603 aaPredicted RBP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 FLYWCH2Q96CP2 140 aaKnown RBP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 MRPL18Q9H0U6 180 aaKnown RBP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 A1L4Q6 167 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 MVDP53602 400 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 TMEM30BQ3MIR4 351 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 SMIM14Q96QK8 99 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 CTLA4P16410 223 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 DUSP2Q05923 314 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 LRRC75BQ2VPJ9 315 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 NUP37Q8NFH4 326 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 OR13H1Q8NG92 308 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 HIKESHIQ53FT3 197 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 ZNF774Q6NX45 483 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 C17orf99Q6UX52 265 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 LILRA3Q8N6C8 439 aaPredicted RBP12.54□□□□□ -0.4
COL7A1-201ENST00000328333 FOXJ2Q9P0K8 574 aa12.54□□□□□ -0.4
COL7A1-201ENST00000328333 SLC25A17O43808 307 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 HYPMO75409 117 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 CA6P23280 308 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 LDLRAD1Q5T700 205 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 TM4SF19Q96DZ7 209 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 WNT16Q9UBV4 365 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 CD74P04233 296 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 DANCRP0C864 163 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 OR8B12Q8NGG6 310 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 PSG9Q00887 426 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 MRGPRFQ96AM1 343 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 HSPB7Q9UBY9 170 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 HPRT1P00492 218 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 HLA-DQB1P01920 261 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 CDAP32320 146 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 CCL11P51671 97 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM53AQ6NSI3 398 aaPredicted RBP12.53□□□□□ -0.4
COL7A1-201ENST00000328333 BEND2Q8NDZ0 799 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 ASB16Q96NS5 453 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 PRR14LQ5THK1 2151 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 A0A1W2PQD3 144 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A10PA6NDY2 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A18PA6NE21 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A16PA6NEW6 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A20PA6NIJ5 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A8PA6NJQ4 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A7PA6NKC0 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A22PA8MWA6 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A12PA8MX19 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A5PA8MXJ8 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A23PA8MXZ1 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A15PP0C7V4 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A13PP0C7W8 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A14PP0C7W9 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 FAM90A24PP0C7X0 464 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 MIXL1Q9H2W2 232 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 TMEM189A5PLL7 270 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 NHLRC3Q5JS37 347 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 ZNF414Q96IQ9 312 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 SGK494Q96LW2 274 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 UBR3Q6ZT12 1888 aa12.53□□□□□ -0.4
COL7A1-201ENST00000328333 SPATA46Q5T0L3 261 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 TMEM78Q5T7P6 136 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 Q6AWC8 147 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 TRMT61AQ96FX7 289 aaKnown RBP12.52□□□□□ -0.4
COL7A1-201ENST00000328333 ALKBH7Q9BT30 221 aaPredicted RBP12.52□□□□□ -0.4
COL7A1-201ENST00000328333 PXNP49023 591 aaPredicted RBP12.52□□□□□ -0.4
COL7A1-201ENST00000328333 MRPS11P82912 194 aaKnown RBP12.52□□□□□ -0.4
COL7A1-201ENST00000328333 TSPO2Q5TGU0 170 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 LDLRAD3Q86YD5 345 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 UBALD2Q8IYN6 164 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 ATOH1Q92858 354 aaPredicted RBP12.52□□□□□ -0.4
COL7A1-201ENST00000328333 RHOVQ96L33 236 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 PLXNB3Q9ULL4 1909 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 NPIPB8E9PQR5 432 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 NPIPB7O75200 414 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 ZNF324O75467 553 aaPredicted RBP12.52□□□□□ -0.4
COL7A1-201ENST00000328333 MS4A7Q9GZW8 240 aaPredicted RBP12.52□□□□□ -0.4
COL7A1-201ENST00000328333 ASCL3Q9NQ33 180 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 COA4Q9NYJ1 87 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 FRRS1LQ9P0K9 344 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms