RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SCARB1Q8WTV0 552 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 SDSLQ96GA7 329 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 DNTTIP1Q9H147 329 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 LIME1Q9H400 295 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 Q9N2K0 584 aa8.36□□□□□ -1.07
HMGB3-201ENST00000325307 CRYBG3Q68DQ2 2970 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 K7N7A8 449 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 RP2O75695 350 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 GLP1RP43220 463 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 MRPS11P82912 194 aaKnown RBP8.35□□□□□ -1.07
HMGB3-201ENST00000325307 ZNF788Q6ZQV5 615 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 OR5D13Q8NGL4 314 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 UBALD1Q8TB05 177 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 COQ2Q96H96 371 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 CHIAQ9BZP6 476 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 CHODLQ9H9P2 273 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 KCNIP1Q9NZI2 227 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 KIR2DS1A0A191URI9 304 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 HSBP1L1C9JCN9 74 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 SIGLEC5O15389 551 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 SIX6O95475 246 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 IFNA4P05014 189 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 KIR2DS4P43632 304 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 KIR2DS1Q14954 304 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 ZNF787Q6DD87 383 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 SLC35E4Q6ICL7 350 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 LYPD2Q6UXB3 125 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 OR10J5Q8NHC4 309 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 IL1F10Q8WWZ1 152 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 NECAP2Q9NVZ3 263 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 TRDCB7Z8K6 153 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 EIF3GO75821 320 aaKnown RBP eCLIP8.35□□□□□ -1.07
HMGB3-201ENST00000325307 RLN1P04808 185 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 C4BPBP20851 252 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 LY6G6FQ5SQ64 297 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 Q6ZPA2 131 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 MOB1BQ7L9L4 216 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 C5orf24Q7Z6I8 188 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 TMEM17Q86X19 198 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 MRGPRDQ8TDS7 321 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 SEBOXQ9HB31 216 aaPredicted RBP8.35□□□□□ -1.07
HMGB3-201ENST00000325307 SLC25A10Q9UBX3 287 aaPredicted RBP8.35□□□□□ -1.07
HMGB3-201ENST00000325307 MIOXQ9UGB7 285 aa8.35□□□□□ -1.07
HMGB3-201ENST00000325307 CENPEQ02224 2701 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 OVOL3O00110 214 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 NDUFB3O43676 98 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 SCTP09683 121 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 OR4E1P0C645 316 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 RAB4AP20338 218 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 LRRC10Q5BKY1 277 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 H1FXQ92522 213 aaKnown RBP8.34□□□□□ -1.07
HMGB3-201ENST00000325307 PRRT1Q99946 306 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 BARX1Q9HBU1 254 aaPredicted RBP8.34□□□□□ -1.07
HMGB3-201ENST00000325307 KIAA2026Q5HYC2 2103 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 GIPP09681 153 aaPredicted RBP8.34□□□□□ -1.07
HMGB3-201ENST00000325307 OR5H8P0DN80 308 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 GPR6P46095 362 aaPredicted RBP8.34□□□□□ -1.07
HMGB3-201ENST00000325307 ATP5J2P56134 94 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 TMEM33P57088 247 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 HIST2H2BCQ6DN03 193 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 OR2AK2Q8NG84 335 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 PSMG3-AS1Q96PY0 264 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 OPN4Q9UHM6 478 aa8.34□□□□□ -1.07
HMGB3-201ENST00000325307 ODAMA1E959 279 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 FAM74A7A6NL05 159 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 HLA-DRB3P79483 266 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 FAM74A3Q4VXF1 159 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 ETV3LQ6ZN32 361 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 FGFRL1Q8N441 504 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 ZNF525Q8N782 197 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 C14orf79Q96F83 325 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 DCTN5Q9BTE1 182 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 TAF9BQ9HBM6 251 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 GPN1Q9HCN4 374 aaPredicted RBP8.33□□□□□ -1.08
HMGB3-201ENST00000325307 TRBV6-6A0A0A6YYG2 114 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 C9orf170A2RU37 121 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 HSPA12AO43301 675 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 VAX1Q5SQQ9 334 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 PERPQ96FX8 193 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 KIRREL1Q96J84 757 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 FAM234AQ9H0X4 552 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 UNKLQ9H9P5 680 aaKnown RBP8.33□□□□□ -1.08
HMGB3-201ENST00000325307 RAI1Q7Z5J4 1906 aaPredicted RBP8.33□□□□□ -1.08
HMGB3-201ENST00000325307 ARID1AO14497 2285 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 CEACAM18A8MTB9 384 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 HMSDA8MTL9 139 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 DVL1O14640 695 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 GOSR2O14653 212 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 IGHV4-39P01824 125 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 ARRDC1Q8N5I2 433 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 OR13A1Q8NGR1 328 aa8.33□□□□□ -1.08
HMGB3-201ENST00000325307 SLC25A21Q9BQT8 299 aaPredicted RBP8.33□□□□□ -1.08
HMGB3-201ENST00000325307 OPN1MWP04001 364 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 OPN1MW2P0DN77 364 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 OPN1MW3P0DN78 364 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 IL2RGP31785 369 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 SLC25A24Q6NUK1 477 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 TMED4Q7Z7H5 227 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 RFESDQ8TAC1 157 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 ARL11Q969Q4 196 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms